Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A15
         (313 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...    91   1e-19
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p...    28   1.2  
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.       28   1.2  
U23527-3|AAC46573.3|  596|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical p...    27   3.6  
Z35639-5|CAA84699.2|  534|Caenorhabditis elegans Hypothetical pr...    26   4.8  
Z82053-10|CAB04838.2|  278|Caenorhabditis elegans Hypothetical p...    26   6.4  
Z73422-3|CAA97766.1|  523|Caenorhabditis elegans Hypothetical pr...    25   8.4  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 40/78 (51%), Positives = 54/78 (69%)
 Frame = +3

Query: 78  LAYKSGQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYVIFRIXXXXXXXXXXXXXXATYG 257
           L  ++  YRQL+ +HR PRPTRP+KARRLGYRAKQG+V++R+               TYG
Sbjct: 23  LRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFVVYRVRVRRGNRKRPVCKGQTYG 82

Query: 258 KPKSHGVNQLKPTRNLQS 311
           KPK+HGVN+LK  ++ Q+
Sbjct: 83  KPKTHGVNELKNAKSKQA 100


>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
            protein 40 protein.
          Length = 1415

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +1

Query: 139  RGQTRREGLDTVPSKVMLSSESACAVVAVNA-QCPRELPTANPRAMVSTN*NPLATCS 309
            R  T+  G    P     SS S   ++A    Q P    TA PR  V+   +P A+CS
Sbjct: 1279 RSFTQLAGATPPPPHSAASSSSRPTIIAAGGRQVPVGRATAQPRVNVANIYSPFASCS 1336


>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
          Length = 1415

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +1

Query: 139  RGQTRREGLDTVPSKVMLSSESACAVVAVNA-QCPRELPTANPRAMVSTN*NPLATCS 309
            R  T+  G    P     SS S   ++A    Q P    TA PR  V+   +P A+CS
Sbjct: 1279 RSFTQLAGATPPPPHSAASSSSRPTIIAAGGRQVPVGRATAQPRVNVANIYSPFASCS 1336


>U23527-3|AAC46573.3|  596|Caenorhabditis elegans Hypothetical
           protein K09E2.2 protein.
          Length = 596

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 105 GDIAHSYTQEKSHNIAHFFLYTPVN 31
           GDI +  T EKS N  H ++  P N
Sbjct: 37  GDILYDVTDEKSANTVHSYVLDPEN 61


>Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical
           protein T19B10.3 protein.
          Length = 653

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 177 WHGIQAFSPCLASWAWERGAYESTGDIAHSYTQ 79
           W+G +  +PC+ S+ ++    ES GD+   Y +
Sbjct: 332 WNGAETEAPCITSYDYDAPISES-GDVTTKYLE 363


>Z35639-5|CAA84699.2|  534|Caenorhabditis elegans Hypothetical
           protein D2045.9 protein.
          Length = 534

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 174 HGIQAFSPCLASWAWERGAYESTGDIAHSY 85
           H +  F   L+SWA   GA    GD+ H Y
Sbjct: 6   HCLLLFHVFLSSWALFPGAEPDEGDVRHIY 35


>Z82053-10|CAB04838.2|  278|Caenorhabditis elegans Hypothetical
           protein T26E3.8 protein.
          Length = 278

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 230 AFTATTAHADSEDNITLLGTVSKPSRLV 147
           A +A TAH  + D  TLL T     RLV
Sbjct: 16  ALSAVTAHLKTMDIFTLLATSKNAQRLV 43


>Z73422-3|CAA97766.1|  523|Caenorhabditis elegans Hypothetical
           protein B0564.4 protein.
          Length = 523

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 107 VDSYAPRSQAHEARQGEKAWIPCQARLCYLQNPR 208
           +D Y   +  + +R G+K WIP    LC     R
Sbjct: 168 LDLYNSYTTKNNSRLGKKYWIPANWALCMTYKAR 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,326,529
Number of Sequences: 27780
Number of extensions: 134412
Number of successful extensions: 398
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)