Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A15
         (313 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   1.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    20   6.0  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    20   6.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   8.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   8.0  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 81  QEKSHNIAHFFLYT 40
           QEK  +I+H+ LYT
Sbjct: 453 QEKKDSISHYHLYT 466


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 103 AS*LVCTALPGPRGQTRREGLDTVP 177
           +S L C  + GPR      G+D +P
Sbjct: 193 SSALACAIMLGPRLGRYDNGIDPLP 217


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 105 QLTRMHRAPRPTRPDKARRLG 167
           QLT+++ A    RP+   R G
Sbjct: 219 QLTKLNNAVEEKRPELTNRKG 239


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 6   HRLVDGRVDLQECIGKSERCY 68
           +R   GRV ++   GK + CY
Sbjct: 369 NRYSSGRVLMRTVRGKEKTCY 389


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 6   HRLVDGRVDLQECIGKSERCY 68
           +R   GRV ++   GK + CY
Sbjct: 369 NRYSSGRVLMRTVRGKEKTCY 389


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,211
Number of Sequences: 438
Number of extensions: 1530
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)