Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A14
         (314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    25   2.0  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   3.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   4.7  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    24   4.7  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    24   4.7  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    24   6.3  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    24   6.3  

>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +1

Query: 190 LIPFLYFLHGLYCNIIVNLYKVIHTPQMFCYNCKLKCKFI 309
           + P LY  + L C   +  YK+I    +F Y   +   F+
Sbjct: 454 MTPILYSFYALLCCYYIYSYKLIPHSSIFVYTVPIISTFL 493


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 94  PLVAFSAALVTLPPPASLKFTAFITPTATL 5
           P  + ++   T+PP  S+  T  + PT +L
Sbjct: 73  PSTSHNSTTTTVPPTTSMNTTTTVPPTTSL 102


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 125 VLYTTAILHSPKGVQ-KERRATNS 193
           VLYT+    +PKGV    R ATNS
Sbjct: 364 VLYTSGSTGNPKGVAISHRAATNS 387


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 86  HQGQEVASTVNSSVLYTTAILHSPKGV 166
           H+ +   S    SVL+T+++  SP GV
Sbjct: 167 HERESFPSEPQVSVLFTSSVKRSPHGV 193


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 178 KGYKLIPFLYFLHGLYCNIIVNLYKV 255
           K  K I  +Y LHGLY      LY+V
Sbjct: 64  KAIKHIYHVYGLHGLYQGHTATLYRV 89


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 79  SAALVTLPPPASLKFTAFITPTAT 8
           S  +VTLPPPAS   ++F T T T
Sbjct: 183 STDIVTLPPPAS-STSSFSTITNT 205


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 46  KQVVAKSPKLPKKPPRAR 99
           KQ+V K PKL +  PR R
Sbjct: 353 KQIVKKLPKLKEDSPRKR 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,154,856
Number of Sequences: 5004
Number of extensions: 20543
Number of successful extensions: 56
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)