Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A14
         (314 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0125 + 15529391-15529495,15530066-15530226,15530315-155305...    30   0.33 
05_01_0296 - 2303344-2303395,2303732-2304180,2304287-2304355,230...    29   0.58 
02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665     28   1.8  
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903     27   3.1  
07_01_0219 - 1627669-1629765                                           27   3.1  
12_02_0388 - 18486957-18487016,18487286-18489418,18489985-184904...    26   5.4  
10_08_0924 - 21602510-21603578,21603759-21604275,21604360-21604390     26   5.4  
11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610           26   7.1  
11_06_0198 - 21158350-21159528                                         25   9.4  
10_08_0645 - 19562886-19564484                                         25   9.4  

>02_03_0125 +
           15529391-15529495,15530066-15530226,15530315-15530570,
           15531360-15531374,15533608-15533967
          Length = 298

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 5   EGRRRCNKGCELQGSRWWQSHQSCRKSHQGQEVASTVNSS 124
           E RRRC+K   L+  R W++   C     G+ V  + N++
Sbjct: 100 ERRRRCSKSVALRDLRLWEASTMCALLSVGERVRRSSNTA 139


>05_01_0296 -
           2303344-2303395,2303732-2304180,2304287-2304355,
           2304539-2306546,2311181-2311425
          Length = 940

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 314 YSMNLHFSLQL*QNI*GVCITLYKLTIMLQYKPCKKYR 201
           +S+N+ +SL L Q I  +C+ L  LT+    K  +KY+
Sbjct: 206 WSLNIFYSLVLAQGIIFICMLLNPLTVYFVLKVRRKYK 243


>02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665
          Length = 727

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 121 LSFIYNCDTSFTERCSEGKKGYKLIPFLYFLHGLYCNI 234
           L +      SF E+C+ GK    L+  L+ +  +YCN+
Sbjct: 226 LKYALRATKSF-EKCAGGKPSLNLVMSLHVVAAIYCNL 262


>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
          Length = 1135

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -1

Query: 233 MLQYKPCKKYRKGMSL*P-FFPSE 165
           M +  PCKK +KGM++ P FF S+
Sbjct: 661 MSKLNPCKKQKKGMNILPKFFTSK 684


>07_01_0219 - 1627669-1629765
          Length = 698

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +1

Query: 55  VAKSPKLPKKPPRARS 102
           VAK PKLP++ P+ARS
Sbjct: 298 VAKLPKLPREGPKARS 313


>12_02_0388 -
           18486957-18487016,18487286-18489418,18489985-18490484,
           18490728-18490899
          Length = 954

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = +1

Query: 121 LSFIYNCDTSFTERCSEGKKGYKLIPFLYFLHGLYCNIIVNLYKVIHTP---QMFCYNCK 291
           L  +Y C   FT+   EG +   L   L  L  + C  + N+  V H P    +  YNC+
Sbjct: 742 LEKLYICGHYFTDVLWEGVESQDLFQNLRRLDLISCISLTNISWVQHFPYLEDLIVYNCE 801


>10_08_0924 - 21602510-21603578,21603759-21604275,21604360-21604390
          Length = 538

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 8   GRRRCNKGCELQGSRW-WQSHQSCRKSHQGQEVASTVNSSVLYTTAIL 148
           G RRC +  EL+G R+ W +  S   +  G+   + V +++L  T ++
Sbjct: 95  GGRRCGRSPELEGERFLWYAPHSGFSNQVGELRNAAVAAALLNRTLVV 142


>11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610
          Length = 439

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -2

Query: 115 NSASYFLPLVAFSAALVTLPPPASLKFTAFITP 17
           N+A  F  LVA +A+L++LPPP+    + ++ P
Sbjct: 7   NTALAFFLLVA-AASLLSLPPPSLAVTSPYVRP 38


>11_06_0198 - 21158350-21159528
          Length = 392

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +2

Query: 2   HEGRRRCNKGCELQGSRW--WQSHQSCRKSHQGQEVASTVN 118
           H GR  C K C     +W   Q  + CR   + Q+ A  V+
Sbjct: 163 HHGRDPCYKQCRHHHDQWKKQQCMEECRYHQRQQDAAVDVD 203


>10_08_0645 - 19562886-19564484
          Length = 532

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 4   RGSPSV**RL*TSRKQVVAKSPKLPKKPPRARSS 105
           RGSPS   R   +  Q VA +P  P++ PRA S+
Sbjct: 414 RGSPSRALRTVINALQHVAPAPAPPQQQPRASSA 447


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,195,018
Number of Sequences: 37544
Number of extensions: 118489
Number of successful extensions: 366
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)