Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A14
         (314 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    31   0.17 
AC024806-2|AAK84613.1|  433|Caenorhabditis elegans Hypothetical ...    30   0.30 
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso...    29   0.70 
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso...    29   0.70 
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor...    29   0.70 
AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensor...    29   0.70 
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor...    29   0.70 
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor...    29   0.70 
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor...    29   0.70 
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor...    29   0.70 
Z81504-1|CAB04116.1|  426|Caenorhabditis elegans Hypothetical pr...    27   2.1  
Z83109-9|CAJ43453.1|  371|Caenorhabditis elegans Hypothetical pr...    26   5.0  
Z81139-1|CAB03477.1|  294|Caenorhabditis elegans Hypothetical pr...    26   5.0  
AF016665-8|AAC71178.1|  324|Caenorhabditis elegans Serpentine re...    25   8.7  
AC024757-1|AAF59450.3|  490|Caenorhabditis elegans Hypothetical ...    25   8.7  

>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +2

Query: 47   SRWWQSHQSCRKSHQGQEVASTVNSSVLYTTAILHSPKGVQKERRATN 190
            SR+   H S   S  G EV S  +SS+  +T  L+S K  ++ RRA N
Sbjct: 3717 SRFLNMHNSGSDSDSGSEVRSDSSSSLGGSTESLNSSKKGKRARRAMN 3764


>AC024806-2|AAK84613.1|  433|Caenorhabditis elegans Hypothetical
           protein Y52E8A.4 protein.
          Length = 433

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 223 YCNIIVNLYKVIHTPQMFCY 282
           +C   VN +K++ TP+MFC+
Sbjct: 211 FCETFVNSFKLLKTPRMFCF 230


>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
           abnormality protein1, isoform g protein.
          Length = 1604

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 29  GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 202
           GCE++   ++  H +CR S  H+    AS  +S V      L +P   +K+R  T+  L 
Sbjct: 493 GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 551

Query: 203 Y 205
           Y
Sbjct: 552 Y 552


>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
           abnormality protein1, isoform f protein.
          Length = 1818

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 29  GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 202
           GCE++   ++  H +CR S  H+    AS  +S V      L +P   +K+R  T+  L 
Sbjct: 707 GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 765

Query: 203 Y 205
           Y
Sbjct: 766 Y 766


>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform e protein.
          Length = 1954

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 29   GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 202
            GCE++   ++  H +CR S  H+    AS  +S V      L +P   +K+R  T+  L 
Sbjct: 843  GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 901

Query: 203  Y 205
            Y
Sbjct: 902  Y 902


>AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform c protein.
          Length = 1167

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 29   GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 202
            GCE++   ++  H +CR S  H+    AS  +S V      L +P   +K+R  T+  L 
Sbjct: 892  GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 950

Query: 203  Y 205
            Y
Sbjct: 951  Y 951


>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform b protein.
          Length = 1685

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 29   GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 202
            GCE++   ++  H +CR S  H+    AS  +S V      L +P   +K+R  T+  L 
Sbjct: 892  GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 950

Query: 203  Y 205
            Y
Sbjct: 951  Y 951


>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform d protein.
          Length = 1995

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 29   GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 202
            GCE++   ++  H +CR S  H+    AS  +S V      L +P   +K+R  T+  L 
Sbjct: 884  GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 942

Query: 203  Y 205
            Y
Sbjct: 943  Y 943


>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform h protein.
          Length = 2006

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 29   GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 202
            GCE++   ++  H +CR S  H+    AS  +S V      L +P   +K+R  T+  L 
Sbjct: 895  GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 953

Query: 203  Y 205
            Y
Sbjct: 954  Y 954


>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform a protein.
          Length = 2007

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 29   GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 202
            GCE++   ++  H +CR S  H+    AS  +S V      L +P   +K+R  T+  L 
Sbjct: 896  GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 954

Query: 203  Y 205
            Y
Sbjct: 955  Y 955


>Z81504-1|CAB04116.1|  426|Caenorhabditis elegans Hypothetical
           protein F15H9.1 protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 169 EGKKGYKLIPFLYFLHGLYCNIIVNLYKVIHTPQM 273
           +GK     IP   +LHG+  N I  L+  IHTP +
Sbjct: 131 KGKHCPPSIPKKAWLHGICKNNIKKLFSSIHTPML 165


>Z83109-9|CAJ43453.1|  371|Caenorhabditis elegans Hypothetical
           protein F44G3.14 protein.
          Length = 371

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 130 IYNCDTSFTERCSEGKKGYKLIPFLYF 210
           IYNC T+F  R  +   GY+   F ++
Sbjct: 26  IYNCYTNFCNRIGDDVIGYREFEFWFY 52


>Z81139-1|CAB03477.1|  294|Caenorhabditis elegans Hypothetical
           protein W05H5.1 protein.
          Length = 294

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 46  KQVVAKSPKLPKKPPR 93
           +Q+  K+P+LP+KPPR
Sbjct: 260 RQMNKKTPRLPEKPPR 275


>AF016665-8|AAC71178.1|  324|Caenorhabditis elegans Serpentine
           receptor, class h protein250 protein.
          Length = 324

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 147 SIAVVYKTELLTVLATSCPWWLFRQLW 67
           SI  VY+  LLTV+  +  W  FR+ +
Sbjct: 109 SIIAVYENRLLTVINPTSRWHKFRKAY 135


>AC024757-1|AAF59450.3|  490|Caenorhabditis elegans Hypothetical
           protein Y37E11AL.5 protein.
          Length = 490

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 110 TVNSSV-LYTTAILHSPKGVQKERRATNSFLFYIFYM 217
           TV S V L  T +L     VQK +    +FLFY+F++
Sbjct: 180 TVTSFVTLICTVLLLFMAAVQKNQPIDCAFLFYLFFV 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,473,696
Number of Sequences: 27780
Number of extensions: 115245
Number of successful extensions: 323
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)