Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A14
         (314 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    27   0.041
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   1.2  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    23   1.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   1.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   2.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   2.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   3.5  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    20   6.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   8.1  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    20   8.1  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 27.5 bits (58), Expect = 0.041
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 11  RRRCNKGCELQGSRWWQSHQSCRKSHQGQEVASTVN 118
           R RC+   ++ GS+ WQ  +SC    +  E  ++V+
Sbjct: 54  RGRCSSYLQVSGSKIWQMERSCMCCQESGEREASVS 89


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 259 HTPQMFCYNCKLKCKFIE 312
           +TP + C+   + CKF E
Sbjct: 357 YTPVLDCHTAHIACKFAE 374



 Score = 21.0 bits (42), Expect = 3.5
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 9   VAVGVIKAVNF 41
           VAVGVIK+V F
Sbjct: 433 VAVGVIKSVTF 443


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 259 HTPQMFCYNCKLKCKFIE 312
           +TP + C+   + CKF E
Sbjct: 68  YTPVLDCHTAHIACKFAE 85


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +3

Query: 9   VAVGVIKAVNF 41
           VAVGVIKAV F
Sbjct: 433 VAVGVIKAVTF 443



 Score = 21.4 bits (43), Expect = 2.7
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +1

Query: 259 HTPQMFCYNCKLKCKFIE 312
           +TP + C+   + CKF +
Sbjct: 357 YTPVLDCHTAHIACKFAD 374


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 101 VASTVNSSVLYTTAILHSPKGVQKERRATNSFLFYI 208
           V S  +  VLYTT  + +  G  K+     SF+ Y+
Sbjct: 167 VISMHDGLVLYTTPSICTALGYLKDAWIGRSFIDYV 202


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 101 VASTVNSSVLYTTAILHSPKGVQKERRATNSFLFYI 208
           V S  +  VLYTT  + +  G  K+     SF+ Y+
Sbjct: 162 VISMHDGLVLYTTPSICTALGYLKDAWIGRSFIDYV 197


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 304 TYTLVCSYNKTFEVY 260
           TYT VC Y+ T+  Y
Sbjct: 154 TYTPVCEYDHTWWPY 168


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
          receptor 2 protein.
          Length = 210

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 94 PLVAFSAALVTLPPPASLKFTA 29
          PL+ FSA L T+ P +   F A
Sbjct: 11 PLMEFSATLDTVVPNSGELFKA 32


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 126 FYIQLRYFIHRKVFRRKEGLQTHSFSIFFTWLI 224
           F I+    I+  +   + GL+    SIF  WLI
Sbjct: 128 FSIERYLAIYHPLRHYRSGLKRAIRSIFGAWLI 160


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 238 Q*CYSISHVKNI 203
           Q CY+I+H++ I
Sbjct: 101 QLCYNINHIEQI 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,904
Number of Sequences: 438
Number of extensions: 1431
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)