Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_A13
(333 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 27 0.99
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 25 2.3
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 25 3.0
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 3.0
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 25 3.0
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 25 4.0
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos... 25 4.0
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 24 5.3
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot... 24 5.3
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 24 7.0
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 24 7.0
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 24 7.0
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 24 7.0
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 24 7.0
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 23 9.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 23 9.2
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 26.6 bits (56), Expect = 0.99
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -3
Query: 223 FRHPTLSASLMVR--GILKKWSTPTLSSDQPYFTLSP 119
FR P + L+ +L KWSTPT + F SP
Sbjct: 2123 FREPIRISKLLQNFPALLSKWSTPTKLVEPSQFRASP 2159
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 25.4 bits (53), Expect = 2.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 156 VGVDHFFKIPRTISEAESVGWRKISRPPG 242
+GV H+ I R + +S+GW K++ G
Sbjct: 303 LGVSHY-SIDRVLQATKSIGWTKLTGAGG 330
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.0 bits (52), Expect = 3.0
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = -3
Query: 283 SLPDVQYMINSGSGPGGRLIFRHPTLSASLM---VRGILKKWSTPT 155
+LPD +Y + G GG LIF PT+S +++ +R L +PT
Sbjct: 336 NLPDSKYELLFGVQSGGDLIF-VPTVSLTIIQSEIRNRLYSVKSPT 380
>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 413
Score = 25.0 bits (52), Expect = 3.0
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -1
Query: 120 RCVVIHKRPWQERRI*RSSYYMITYKFGRYRPL 22
+C++I PW + + RSS Y + G + L
Sbjct: 229 KCIIIDP-PWPNKSVARSSVYKVNRNLGYLKAL 260
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 25.0 bits (52), Expect = 3.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 260 D*LRKRAWRSTYLPPSNTLCLANGTRDFEEVVNT 159
D RK ++ LPPSN+ + + FEEV+N+
Sbjct: 500 DDARKLDIQNERLPPSNSRRRSTDLKAFEEVMNS 533
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 24.6 bits (51), Expect = 4.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 132 KYGWSDDNVGVDHFFKIPRTISEAESVGWRKISRP 236
KYG DDN + F++P++ +S+ R + P
Sbjct: 824 KYGSIDDNQSISLVFEVPKSHFVHKSMLLRGVKMP 858
>SPAC1952.07 |rad1||checkpoint clamp complex protein
Rad1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 323
Score = 24.6 bits (51), Expect = 4.0
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 15 SIVADGIVRIYT*SYNMKIVIFFALATAVCGLQHNGLRVKYGW 143
SI DG RI T +++ V +C +Q+NG + W
Sbjct: 83 SIYTDGKERISTSAWDQPTVNIMHKRGVICKVQYNGPGCPFIW 125
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 24.2 bits (50), Expect = 5.3
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -3
Query: 175 KKWSTPTLSSDQPYFTLSPLCCNPQTAVARAKNITIFILYDYV*IRTIPSATIE 14
+K P S + +FT LC P++A A +++ Y + IP +IE
Sbjct: 314 RKIIVPKASGNVAWFTFEQLCGEPKSA---ADYLSLASRYHVFIVSDIPKLSIE 364
>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 24.2 bits (50), Expect = 5.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 238 GGRLIFRHPTLSASLMVRGILK 173
GGR + HPT+ + ++ IL+
Sbjct: 181 GGRCLSHHPTICSHILAASILR 202
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 23.8 bits (49), Expect = 7.0
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 305 LVIQRTHQPARRTVHD*LRK-RAWRSTYLPPSNTLCLANGT 186
+V +T +P R V D LRK + R+ PP+ LA T
Sbjct: 21 IVAHKTGEPVRYEVEDDLRKLKPSRTAPKPPAINTNLAEDT 61
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 23.8 bits (49), Expect = 7.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 102 KRPWQERRI*RSSYYMITYKFGRYRPLRLNGA 7
+R ++E R S Y+ TYK G +++NGA
Sbjct: 16 QRGFREHGQIRLSTYLKTYKVGDIVDIKVNGA 47
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 23.8 bits (49), Expect = 7.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 102 KRPWQERRI*RSSYYMITYKFGRYRPLRLNGA 7
+R ++E R S Y+ TYK G +++NGA
Sbjct: 16 QRGFREHGQIRLSTYLKTYKVGDIVDIKVNGA 47
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 23.8 bits (49), Expect = 7.0
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = -3
Query: 319 KTNPVL*YNGHTSLPDVQYMINSGSGPGGRLIFRHPTLSASLM 191
KTN YN H D Y I + G RL+ P + A M
Sbjct: 304 KTNCDKWYNEHEHQRDPAYAIRTALTRGVRLLCTEPIVQAFCM 346
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 23.8 bits (49), Expect = 7.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 239 WRSTYLPPSNTLCLANGTRDFEEVVNTHVII 147
W+ T L +N L L NGT ++N +V++
Sbjct: 219 WQQTVLSITNWLGLLNGTGWIYSLLNQNVLM 249
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 23.4 bits (48), Expect = 9.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 228 SRPPGPLPELIMYCTSG 278
S PGP+P L++ C G
Sbjct: 328 STKPGPVPPLVLTCCVG 344
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 23.4 bits (48), Expect = 9.2
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 150 HPTNRTLLSVRCVVIHK 100
+P+ TLLS+RC + H+
Sbjct: 1742 YPSQITLLSLRCTLCHE 1758
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,550,803
Number of Sequences: 5004
Number of extensions: 31963
Number of successful extensions: 81
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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