Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_A13
(333 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0082 + 27575924-27576917,27577371-27577732 29 1.2
07_03_1763 - 29316969-29318120 27 2.8
01_07_0359 - 43042675-43042758,43042956-43043024,43043099-430431... 27 2.8
03_04_0127 - 17508808-17509029,17509195-17509938,17510004-175102... 27 4.9
03_01_0290 + 2246791-2247027,2248089-2248346 27 4.9
01_01_1096 - 8659091-8659459,8660730-8661050,8661416-8661694,866... 27 4.9
01_01_0911 - 7176355-7176372,7176502-7176756,7177352-7177615,717... 26 6.4
11_04_0160 + 14247463-14247584,14247710-14247923,14250099-142502... 26 8.5
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965... 26 8.5
02_05_1305 - 35586499-35586601,35586963-35587034,35587111-355872... 26 8.5
>05_07_0082 + 27575924-27576917,27577371-27577732
Length = 451
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 322 PKTNPVL*YNGHTSLPDVQYMINSGSGPGGRLI 224
P P + + G S PD+ ++ +G+GP GR I
Sbjct: 360 PGIAPNVKFGGSGSYPDLPWVSTTGTGPNGRTI 392
>07_03_1763 - 29316969-29318120
Length = 383
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 118 LCCNPQTAVARAKNITIFILYDY 50
LC P +A A N T++ LYDY
Sbjct: 119 LCGGPNITMAMADNKTMYALYDY 141
>01_07_0359 -
43042675-43042758,43042956-43043024,43043099-43043159,
43043260-43043768,43044545-43045153,43045697-43045972,
43046581-43046769,43047006-43047116,43047621-43047908,
43047990-43048041,43048648-43048824,43049249-43049314,
43049675-43049929,43050071-43050577,43050807-43050886,
43050974-43051207
Length = 1188
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 183 PRTISEAESVGWRKISRPPGPLPELIMYCTS 275
PR++S A S+ + +PP PL + C S
Sbjct: 21 PRSVSLAASISFSSARKPPEPLRRAVADCLS 51
>03_04_0127 -
17508808-17509029,17509195-17509938,17510004-17510242,
17510334-17510436,17510666-17510770,17510838-17510906,
17510998-17511402,17512048-17512156,17512240-17512295
Length = 683
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 167 PLLQNPSYH*RGRECWMAEDKSTSR 241
P++Q PS H + R MAED+ SR
Sbjct: 123 PVVQKPSCHRQARALDMAEDQGESR 147
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 129 LSVRCVVIHKRPWQERRI*RSSYYMITYKFGRYRPLRLNGA 7
L R + RP++++ + Y+ TYK G Y +++NGA
Sbjct: 7 LRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGA 47
>01_01_1096 -
8659091-8659459,8660730-8661050,8661416-8661694,
8661781-8661897,8662142-8662210,8663204-8663397,
8663552-8663633
Length = 476
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 223 FRHPTLSASLMVRGILKKWSTPTLSSDQPYFTLS 122
F HP M GI +P+++S PY +L+
Sbjct: 176 FHHPEFGGVPMTPGIYPPLQSPSIASPHPYASLA 209
>01_01_0911 -
7176355-7176372,7176502-7176756,7177352-7177615,
7177691-7177810,7177910-7178041,7178136-7178252,
7178335-7178459,7178611-7178920,7179368-7179550,
7179643-7179787,7180126-7181355,7181454-7181563,
7181768-7182037,7182130-7182963
Length = 1370
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 117 NGLRVKYGWSDDNVGVDHFFKIPRTISEAESVGWRKISRPPGPLPELI 260
N +R W+D + D + PR + GWR++ RPP P+ +
Sbjct: 273 NDVRYNPIWADADEAADLY---PR---QGSGKGWRELMRPPSLYPQRV 314
>11_04_0160 +
14247463-14247584,14247710-14247923,14250099-14250215,
14251578-14251670,14251748-14251922,14252981-14253017,
14253842-14253875,14254212-14254481,14255768-14255872,
14256295-14256392,14256474-14256616,14257197-14257290,
14257378-14257487,14258018-14258172,14258252-14258332,
14258415-14258535,14259358-14259464,14259537-14259668,
14261105-14261258,14264094-14264211,14264344-14264517,
14264831-14264882,14265450-14265577,14265670-14265820,
14265904-14266242
Length = 1107
Score = 25.8 bits (54), Expect = 8.5
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 249 PELIMYCTSGRLVCP 293
PE+++YC +GRL+ P
Sbjct: 875 PEILLYCQAGRLLNP 889
>03_02_0584 -
9650996-9651488,9651630-9652049,9652129-9652158,
9652201-9652287,9652657-9653669,9653832-9654854,
9654946-9654969
Length = 1029
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 154 LSSDQPYFTLSPLCCNPQTA 95
+S+ QP P CCNP A
Sbjct: 484 VSASQPSLPTEPACCNPDEA 503
>02_05_1305 -
35586499-35586601,35586963-35587034,35587111-35587232,
35587767-35587826,35587919-35587997,35588219-35588307,
35588405-35588492,35591761-35591821,35592546-35592890,
35593094-35594351
Length = 758
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -1
Query: 162 HPRYHPTNRTLL 127
HPR+HPT R+LL
Sbjct: 77 HPRHHPTARSLL 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,323,720
Number of Sequences: 37544
Number of extensions: 222878
Number of successful extensions: 575
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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