Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_A13
(333 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 0.35
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 0.35
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 0.35
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 27 3.3
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 27 3.3
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 27 4.3
Z82262-1|CAB05151.2| 361|Caenorhabditis elegans Hypothetical pr... 26 5.7
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 26 7.5
AC024810-20|AAO21413.1| 137|Caenorhabditis elegans Hypothetical... 26 7.5
AC024810-19|AAF60770.1| 427|Caenorhabditis elegans Hypothetical... 26 7.5
Z83240-1|CAB05815.2| 373|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z74030-7|CAA98447.2| 559|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z50028-4|CAL36519.1| 298|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z50028-3|CAL36518.1| 320|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z50028-1|CAL36517.1| 471|Caenorhabditis elegans Hypothetical pr... 25 10.0
DQ365983-1|ABD14368.1| 298|Caenorhabditis elegans intraflagella... 25 10.0
DQ360813-1|ABC88650.1| 320|Caenorhabditis elegans intraflagella... 25 10.0
DQ360812-1|ABC88649.1| 474|Caenorhabditis elegans intraflagella... 25 10.0
AY204178-1|AAO39182.1| 373|Caenorhabditis elegans nuclear recep... 25 10.0
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 0.35
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +3
Query: 57 YNMKIVIFFALATAVCGLQHNGLR--VKY-GWSDDNVGVDHFFKIPRTISEAESVGWRKI 227
++ K V F+ +++CG N VKY ++D ++ FF RT SE S W+++
Sbjct: 1130 FHEKAVKEFSTVSSMCGKMKNDWESLVKYYAFNDKKYPMEEFFADIRTFSEQYSNAWKEL 1189
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 0.35
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +3
Query: 57 YNMKIVIFFALATAVCGLQHNGLR--VKY-GWSDDNVGVDHFFKIPRTISEAESVGWRKI 227
++ K V F+ +++CG N VKY ++D ++ FF RT SE S W+++
Sbjct: 1130 FHEKAVKEFSTVSSMCGKMKNDWESLVKYYAFNDKKYPMEEFFADIRTFSEQYSNAWKEL 1189
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 0.35
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +3
Query: 57 YNMKIVIFFALATAVCGLQHNGLR--VKY-GWSDDNVGVDHFFKIPRTISEAESVGWRKI 227
++ K V F+ +++CG N VKY ++D ++ FF RT SE S W+++
Sbjct: 713 FHEKAVKEFSTVSSMCGKMKNDWESLVKYYAFNDKKYPMEEFFADIRTFSEQYSNAWKEL 772
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 27.1 bits (57), Expect = 3.3
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = -3
Query: 274 DVQYMINSGSGPGGRLIFRHPTLSASLMVRGILKKWSTPTLSS--DQPYFTLSPLCCNPQ 101
D + IN P +F P +V K+W P LSS D P F L P N
Sbjct: 961 DEELRINLRKRPSENTLFEVPLWMVEDVVDKFAKEWGVPFLSSFCDDPAF-LIPFVSNSS 1019
Query: 100 TA 95
++
Sbjct: 1020 SS 1021
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 27.1 bits (57), Expect = 3.3
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = -3
Query: 274 DVQYMINSGSGPGGRLIFRHPTLSASLMVRGILKKWSTPTLSS--DQPYFTLSPLCCNPQ 101
D + IN P +F P +V K+W P LSS D P F L P N
Sbjct: 961 DEELRINLRKRPSENTLFEVPLWMVEDVVDKFAKEWGVPFLSSFCDDPAF-LIPFVSNSS 1019
Query: 100 TA 95
++
Sbjct: 1020 SS 1021
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 292 GHTSLPDVQYMINSGSGPGGRLIFRHPTLSASL 194
G +S+P + +NSGS G + + P+ S S+
Sbjct: 606 GTSSIPSISTSVNSGSSTIGSTVTQAPSSSTSM 638
>Z82262-1|CAB05151.2| 361|Caenorhabditis elegans Hypothetical
protein C43F9.4 protein.
Length = 361
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +3
Query: 255 LIMYCTS-GRLVCPLYHKTGFV 317
L+ YC S G+L+C Y+K FV
Sbjct: 106 LLSYCKSDGQLICDWYNKKAFV 127
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 313 NPVL*YNGHTSLPDVQYMINSGSGPGGRLIFRHPTLSASLM 191
N ++ N H +YM + + GGRL+FR L +L+
Sbjct: 771 NRIVRINNHEHTDVQEYMGSYVADAGGRLVFREGALVQALL 811
>AC024810-20|AAO21413.1| 137|Caenorhabditis elegans Hypothetical
protein Y54E10A.16b protein.
Length = 137
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = -2
Query: 170 VVNTHVIIRPTVLYSQSVVL*STNGRGKSEEYNDLHII*LRINSDDTVRYD 18
+ N H++ T+ + + + STN + EE++ + +NSDD ++ D
Sbjct: 8 IANPHILSDTTLTDALAALASSTNVENQDEEFD------MEVNSDDEMKID 52
>AC024810-19|AAF60770.1| 427|Caenorhabditis elegans Hypothetical
protein Y54E10A.16a protein.
Length = 427
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = -2
Query: 170 VVNTHVIIRPTVLYSQSVVL*STNGRGKSEEYNDLHII*LRINSDDTVRYD 18
+ N H++ T+ + + + STN + EE++ + +NSDD ++ D
Sbjct: 8 IANPHILSDTTLTDALAALASSTNVENQDEEFD------MEVNSDDEMKID 52
>Z83240-1|CAB05815.2| 373|Caenorhabditis elegans Hypothetical
protein T23H4.2 protein.
Length = 373
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 242 AWRSTYLPPSNTLCLANGT 186
A+RS L NT+CLAN T
Sbjct: 191 AYRSICLTVENTICLANDT 209
>Z74030-7|CAA98447.2| 559|Caenorhabditis elegans Hypothetical
protein D1054.9b protein.
Length = 559
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +3
Query: 120 GLRVKYGWSDDNVGVDHFFKIPRTISEAESVGWRKISRPPGPLPELIMY 266
G ++K W G+D K R +E+ + +PP P P I Y
Sbjct: 457 GNQLKNTWQQLRTGLDRGVKAVRQSAESSVTHFNYGPQPPQPQPVQIPY 505
>Z50028-4|CAL36519.1| 298|Caenorhabditis elegans Hypothetical
protein F46F6.4d protein.
Length = 298
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 162 VDHFFKIPRTISEAESVGWRKISRPP 239
VD F K+PR ++VG +I PP
Sbjct: 113 VDLFIKVPRPDEIDDNVGLTQIDEPP 138
>Z50028-3|CAL36518.1| 320|Caenorhabditis elegans Hypothetical
protein F46F6.4c protein.
Length = 320
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 162 VDHFFKIPRTISEAESVGWRKISRPP 239
VD F K+PR ++VG +I PP
Sbjct: 135 VDLFIKVPRPDEIDDNVGLTQIDEPP 160
>Z50028-1|CAL36517.1| 471|Caenorhabditis elegans Hypothetical
protein F46F6.4a protein.
Length = 471
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 162 VDHFFKIPRTISEAESVGWRKISRPP 239
VD F K+PR ++VG +I PP
Sbjct: 286 VDLFIKVPRPDEIDDNVGLTQIDEPP 311
>DQ365983-1|ABD14368.1| 298|Caenorhabditis elegans intraflagellar
transport proteinvariant c protein.
Length = 298
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 162 VDHFFKIPRTISEAESVGWRKISRPP 239
VD F K+PR ++VG +I PP
Sbjct: 113 VDLFIKVPRPDEIDDNVGLTQIDEPP 138
>DQ360813-1|ABC88650.1| 320|Caenorhabditis elegans intraflagellar
transport proteinvariant b protein.
Length = 320
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 162 VDHFFKIPRTISEAESVGWRKISRPP 239
VD F K+PR ++VG +I PP
Sbjct: 135 VDLFIKVPRPDEIDDNVGLTQIDEPP 160
>DQ360812-1|ABC88649.1| 474|Caenorhabditis elegans intraflagellar
transport proteinvariant a protein.
Length = 474
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 162 VDHFFKIPRTISEAESVGWRKISRPP 239
VD F K+PR ++VG +I PP
Sbjct: 289 VDLFIKVPRPDEIDDNVGLTQIDEPP 314
>AY204178-1|AAO39182.1| 373|Caenorhabditis elegans nuclear receptor
NHR-69 protein.
Length = 373
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 242 AWRSTYLPPSNTLCLANGT 186
A+RS L NT+CLAN T
Sbjct: 191 AYRSICLTVENTICLANDT 209
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,561,544
Number of Sequences: 27780
Number of extensions: 179150
Number of successful extensions: 433
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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