Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A12
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...   214   5e-57
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...   213   1e-56
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...   212   2e-56
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   4.6  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   4.6  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   4.6  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   6.1  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   6.1  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    25   6.1  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    24   8.0  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    24   8.0  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    24   8.0  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    24   8.0  
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo...    24   8.0  
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    24   8.0  
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    24   8.0  

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  214 bits (522), Expect = 5e-57
 Identities = 94/124 (75%), Positives = 106/124 (85%)
 Frame = +3

Query: 39  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 218
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60

Query: 219 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 398
           V  I+ QRLIKVDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61  VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120

Query: 399 YKLC 410
           YKLC
Sbjct: 121 YKLC 124


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score =  213 bits (519), Expect = 1e-56
 Identities = 93/124 (75%), Positives = 106/124 (85%)
 Frame = +3

Query: 39  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 218
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60

Query: 219 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 398
           V  I+ QRLIKVDGKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61  VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAK 120

Query: 399 YKLC 410
           YKLC
Sbjct: 121 YKLC 124


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  212 bits (518), Expect = 2e-56
 Identities = 93/124 (75%), Positives = 106/124 (85%)
 Frame = +3

Query: 39  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 218
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60

Query: 219 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 398
           V  I+ QRLI+VDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61  VKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120

Query: 399 YKLC 410
           YKLC
Sbjct: 121 YKLC 124


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 168 LVIFLRNRLKYALTGNEVLKIV 233
           L+ F+  RL++ LT  E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +3

Query: 108 GGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYP 287
           G + A RP +G  K+      V  LRN    A    +   IV  R   ++ + RT P+  
Sbjct: 201 GNLNARRPQSGLLKIT-----VGSLRNVTHSAGISKQTEMIVAIRAEDLE-RARTRPSRT 254

Query: 288 AGFMDV--VSIEKTNELFRLIYDVK 356
             F +   + +EKTNE+  ++Y+ K
Sbjct: 255 DRFNETFEIDLEKTNEVEIVVYEKK 279


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 343 IKRNNSFVFSMDTTSINPAGYVGSV 269
           +K+ ++ VF     +INPA Y G+V
Sbjct: 40  LKKRDTNVFDSVVDTINPASYFGTV 64


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 364 NLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVR--TFPSTLMRRCFTILSTS 215
           +LP   ++    +F  ++  T+    G + S +  T  S ++  CFTI+STS
Sbjct: 605 SLPELDFLTSVFNFPLALRNTATRILGIILSTKDSTRISEVLSSCFTIISTS 656


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 196 LSRFRRKITSGKHSRSLWGPVEGRGAYTPPSLS 98
           L R +R   +   + S+W  +E   A+  PSLS
Sbjct: 597 LLRLKRSNRTAAQTASVWNRIERAAAHDGPSLS 629


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 115 TPPSLSNIHALGAFKRFKCFFGPRAMLNKTLNKK 14
           T  +L  IH+LG F    C FGP  +  K L  K
Sbjct: 246 TNRALKIIHSLGMFA---CIFGPLEIHTKKLQSK 276


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 153 RECLPLVIFLRNRLK-YALTGNEVLKIVKQRLIKV 254
           +ECLP   F +N+L  Y L  + VL++ K+R + V
Sbjct: 52  KECLPKFSF-QNKLDFYFLFSDRVLQLQKERKVLV 85


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 90  WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 236
           + L KLG V  P+  T  H LR+    +  L + +   ++ +EV+ I+K
Sbjct: 277 YKLKKLGVVAEPQ-LTSIHSLRDDWSFLTLLSDGITDVVSDDEVVDIIK 324


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -2

Query: 343 IKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITS 167
           I RN S+   MD      + YV  +  + S  +  C  +  ++LP S YLS  R ++ S
Sbjct: 273 ICRNYSY---MDILLSKKSKYVKKLEKYWSIYLSNCKKLGISTLPPSNYLSPNRAELES 328


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 3   TRVSFLFKVLFNMARGPKKHLKRLNAPKAWMLDKL 107
           T    +FK +F +     +++  LN  K W   KL
Sbjct: 645 TMAETIFKTIFQIHASQLRYIDNLNVYKNWAFRKL 679


>SPAC17H9.07 |||signal recognition particle subunit Srp21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 171 VIFLRNRLKYALTGNEVLKIVKQRLI--KVDGKVRTDPTYP 287
           ++ + N+L Y  TGNE+    +Q ++   V  + + +P+ P
Sbjct: 67  LLLIANKLSYVSTGNEIPPEPEQEVVASPVTEQKKAEPSAP 107


>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 278 GVSPHFPVHFDETLLHNLKHLIAGERVLEPISQED 174
           G  P  P+ F +  L  +K    G  +L PI++ED
Sbjct: 120 GEQPTEPIDFADPPLPEVKRYGEGNWLLPPIAKED 154


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 216 EVLKIVKQRLIKVDGKV--RTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 389
           EV K+  ++ I+  G      DP+Y    +D +S+++ +   RL+ D   +  + R+  E
Sbjct: 194 EVYKLAAEKGIRRTGHAGEEGDPSYIRSGLDNLSLQRIDHGIRLVED---KELMKRVAEE 250

Query: 390 EAKYKLC 410
                +C
Sbjct: 251 NIMLTMC 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,741,260
Number of Sequences: 5004
Number of extensions: 33892
Number of successful extensions: 109
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)