Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_A12
(410 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 198 1e-51
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 196 8e-51
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 196 8e-51
01_01_1101 + 8731427-8732938 29 1.1
04_04_0950 + 29609484-29611025 27 4.4
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 27 5.8
08_02_0803 + 21390525-21391066,21391799-21391958 27 7.7
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7... 27 7.7
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 198 bits (484), Expect = 1e-51
Identities = 90/123 (73%), Positives = 102/123 (82%)
Frame = +3
Query: 42 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 221
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 222 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKY 401
+ I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+
Sbjct: 78 ISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKF 137
Query: 402 KLC 410
KLC
Sbjct: 138 KLC 140
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 196 bits (477), Expect = 8e-51
Identities = 87/124 (70%), Positives = 103/124 (83%)
Frame = +3
Query: 39 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 218
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 219 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 398
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 399 YKLC 410
+KLC
Sbjct: 121 FKLC 124
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 196 bits (477), Expect = 8e-51
Identities = 87/124 (70%), Positives = 103/124 (83%)
Frame = +3
Query: 39 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 218
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 219 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 398
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 399 YKLC 410
+KLC
Sbjct: 121 FKLC 124
>01_01_1101 + 8731427-8732938
Length = 503
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 224 KHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAAQLVQ--HP 90
+HL+ L P H R A A L+ + R P R HAA LV+ HP
Sbjct: 29 RHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRVHP 75
>04_04_0950 + 29609484-29611025
Length = 513
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 238 CFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 110
CF + + V+ + R +RK + K + L GP +G Y P
Sbjct: 468 CFLAVLVAFAVAWAVRRRQRKAAAEKPADGLLGPTKGSALYDP 510
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 27.1 bits (57), Expect = 5.8
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -2
Query: 148 LWGPVEGRGAYTPPSLSNIHALGAFKR 68
L G G G Y PPSLSN + AFKR
Sbjct: 51 LLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>08_02_0803 + 21390525-21391066,21391799-21391958
Length = 233
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 214 LPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTPP 107
LP Y+S RR S + RSL + R A +PP
Sbjct: 24 LPSRPYISDMRRSAFSDRLLRSLRSEISSRRAPSPP 59
>01_01_0001 +
2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
9504-9562
Length = 616
Score = 26.6 bits (56), Expect = 7.7
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 144 HKLRECL-PLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 284
H CL PL++ +RN L + + +LKI +R +++ K+R Y
Sbjct: 545 HLEENCLEPLLVDMRNDLSCEMFNDNMLKINVKRCVRMAIKLRKKYIY 592
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,756,622
Number of Sequences: 37544
Number of extensions: 235507
Number of successful extensions: 666
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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