Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A12
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   184   2e-47
Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr...    31   0.33 
Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr...    31   0.33 
M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical pr...    29   1.3  
M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical ...    29   1.3  
Z93396-1|CAB07709.1|  875|Caenorhabditis elegans Hypothetical pr...    28   2.3  
AC006638-6|AAK85484.2|  160|Caenorhabditis elegans Hypothetical ...    28   2.3  
AF022980-5|AAG24192.1|  328|Caenorhabditis elegans Serpentine re...    27   4.0  
U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ...    27   5.3  
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport...    27   5.3  
AF000197-5|AAB52900.3|  579|Caenorhabditis elegans Hypothetical ...    27   5.3  
U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    27   7.0  
U53181-7|AAA93487.1|  472|Caenorhabditis elegans Hypothetical pr...    26   9.2  
AL117200-3|CAB55048.1|  257|Caenorhabditis elegans Hypothetical ...    26   9.2  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  184 bits (448), Expect = 2e-47
 Identities = 83/122 (68%), Positives = 98/122 (80%)
 Frame = +3

Query: 45  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 224
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 225 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 404
           KI+ QR+++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +K
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121

Query: 405 LC 410
           LC
Sbjct: 122 LC 123


>Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -2

Query: 394 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 236
           A+S  +R +V+  F   I+ +   +FS + T +NP+G   S R  P TL R C
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214


>Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -2

Query: 394 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 236
           A+S  +R +V+  F   I+ +   +FS + T +NP+G   S R  P TL R C
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214


>M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical
           protein ZK370.3b protein.
          Length = 921

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -1

Query: 263 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 171
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical
           protein ZK370.3a protein.
          Length = 927

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -1

Query: 263 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 171
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical
           protein Y71A12B.6 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 352 TSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMR 242
           T+     N F FS  T S+NP GY+  V     TL +
Sbjct: 236 TASCNGTNEFTFSDPTLSLNPTGYIWGVDQPSGTLAK 272


>Z93396-1|CAB07709.1|  875|Caenorhabditis elegans Hypothetical
           protein ZC15.1 protein.
          Length = 875

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 3   TRVSFLFKVLFNMARGPKKHLKRLNAPKAWMLDKLGGV 116
           TRV  + K+ F + + P   LK   A   WM  +L G+
Sbjct: 685 TRVHDIIKLEFTITKNPPAALKAYQARNTWMQQQLTGL 722


>AC006638-6|AAK85484.2|  160|Caenorhabditis elegans Hypothetical
           protein F41G4.4 protein.
          Length = 160

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 3   TRVSFLFKVLFNMARGPKKHLKRLNAPKAWMLDKLGGV 116
           TRV  + K+ F + + P   LK   A   WM  +L G+
Sbjct: 12  TRVHDIIKLEFTITKNPPAALKAYQARNTWMQQQLTGL 49


>AF022980-5|AAG24192.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein45 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = -2

Query: 364 NLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRF 185
           N     YI+ +    F +D+T  N  G + SV ++ +T      TI  +++ +++  S F
Sbjct: 156 NFELLQYIREDFQETFGLDSTEFNMVGALFSVGSYETTHRAWIATISWSAVSIASITSFF 215


>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
           related protein 2 protein.
          Length = 1272

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 317 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 222
           L   NVH  R   G+    PV FD T+  N+K
Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496


>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
           PGP-2 protein.
          Length = 1272

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 317 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 222
           L   NVH  R   G+    PV FD T+  N+K
Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496


>AF000197-5|AAB52900.3|  579|Caenorhabditis elegans Hypothetical
           protein T21G5.1 protein.
          Length = 579

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 339 NGITHLFSQWIQRP*IPPGTWGQSALSRPL 250
           N +  LF+Q IQ   +PPGT  QS+   P+
Sbjct: 516 NKLPLLFAQTIQATSLPPGTIAQSSTPIPI 545


>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 379 IRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGY 281
           I +I+ L   S++K NNSF+F      I+   Y
Sbjct: 32  IHYIIVLKVVSHLKENNSFLFIFTILGISDIFY 64


>U53181-7|AAA93487.1|  472|Caenorhabditis elegans Hypothetical
           protein F36D4.4 protein.
          Length = 472

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 346 YIKRNNSFVFSMDTTSINPAGYVGSV 269
           YI+ N  F FSM TT++   G++G++
Sbjct: 10  YIELNCKFSFSMATTAVFLCGHLGAL 35


>AL117200-3|CAB55048.1|  257|Caenorhabditis elegans Hypothetical
           protein Y50E8A.5 protein.
          Length = 257

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 186 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNE 329
           N +KY L  N+   IV      V+ K++ D    AG+   ++I +T++
Sbjct: 98  NWVKYGLPVNQGDSIVSDDKCLVENKLKKDGDSCAGYCMTINITRTDD 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,685,229
Number of Sequences: 27780
Number of extensions: 189920
Number of successful extensions: 545
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)