Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A11
         (188 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   1.00 
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   1.7  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    25   1.7  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    24   3.0  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    23   5.3  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    23   7.0  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    23   7.0  
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2...    23   7.0  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    22   9.3  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    22   9.3  

>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 1.00
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 17  NKCVKQNICVRD-MDVCLFKVTALPHSTSTLYV 112
           N     N   RD +++CLF + ALP+  S+L++
Sbjct: 759 NSRKSDNFLKRDALEMCLFLLEALPNVYSSLFI 791


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 97  VYAVCLVQWKYFIAFSFNNMSCVVNLSY 180
           +Y +CLV W + + FS    S + NL Y
Sbjct: 154 IYTLCLVSWHHHV-FSHIRDSLLQNLLY 180


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -3

Query: 174 EVHDTTHIIEAKCYEIFPLY*TYSVDVLCGRAVTLNKHTSISLTHIF-CFTHLFLFSSC 1
           +V+  + I +   YE+FP    YS+  L  +  ++  + + S    F    + F+F  C
Sbjct: 222 DVYVVSEIFDMIQYEVFPAIWVYSICHLLKQCTSVTTYENASKARFFRRMLNAFIFIFC 280


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 8   ENKNKCVKQNICVRDMDVCLFKVTALPHS 94
           +  +K +KQNI +      +F +  LPH+
Sbjct: 351 DTHSKFIKQNIPLMSPAATVFDIVTLPHN 379


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 17  NKCVKQNICVRDMDVCLFKVTALP 88
           N C++ NI     ++C  + TALP
Sbjct: 285 NPCLRPNIFQLMCEICRLRGTALP 308


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 33  KIYVLGIWMYVCLR 74
           KIYVL + ++VCL+
Sbjct: 152 KIYVLSLLVFVCLQ 165


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 35  NICVRDMDVCLFKVTALPHSTSTL 106
           N C++ ++ CL ++  L H+T  L
Sbjct: 289 NACLKVLEECLVELDKLEHATVLL 312


>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 186 PPVGEVHDTTHIIE 145
           P VG VHD   IIE
Sbjct: 76  PAVGSVHDLVRIIE 89


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 85   QSCHLKQTYIHIPNTYILFHTFIFIF 8
            +SC L   Y+HI N+ I+    +  F
Sbjct: 1217 ESCLLSTEYMHIYNSVIILEKILPCF 1242


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1150

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 78   VTLNKHTSISLTHIFCFTH 22
            V LNK T I+LT +   TH
Sbjct: 1037 VLLNKPTEITLTFLRSLTH 1055


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 796,237
Number of Sequences: 5004
Number of extensions: 12385
Number of successful extensions: 27
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)