Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_A11
(188 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 19 5.4
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 19 5.4
EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor 1-a... 19 5.4
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 19 5.4
AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodo... 19 5.4
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 19 5.4
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 19 7.2
L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein pro... 18 9.5
L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein pro... 18 9.5
DQ855486-1|ABH88173.1| 104|Apis mellifera chemosensory protein ... 18 9.5
DQ435328-1|ABD92643.1| 143|Apis mellifera OBP11 protein. 18 9.5
DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase doma... 18 9.5
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 18 9.5
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 19.0 bits (37), Expect = 5.4
Identities = 5/14 (35%), Positives = 9/14 (64%)
Frame = +3
Query: 84 CRTARLRCMFSTVE 125
C TA + C F+ ++
Sbjct: 363 CHTAHIACKFAEIK 376
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 19.0 bits (37), Expect = 5.4
Identities = 6/12 (50%), Positives = 7/12 (58%)
Frame = +1
Query: 100 YAVCLVQWKYFI 135
Y VC W YF+
Sbjct: 216 YLVCYGIWVYFV 227
>EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor
1-alpha protein.
Length = 119
Score = 19.0 bits (37), Expect = 5.4
Identities = 5/14 (35%), Positives = 9/14 (64%)
Frame = +3
Query: 84 CRTARLRCMFSTVE 125
C TA + C F+ ++
Sbjct: 74 CHTAHIACKFAEIK 87
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 19.0 bits (37), Expect = 5.4
Identities = 6/19 (31%), Positives = 10/19 (52%)
Frame = +2
Query: 50 DMDVCLFKVTALPHSTSTL 106
D +C + +L H+T L
Sbjct: 142 DTQICSMMIESLSHTTQDL 160
>AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength
rhodopsin protein.
Length = 154
Score = 19.0 bits (37), Expect = 5.4
Identities = 6/12 (50%), Positives = 7/12 (58%)
Frame = +1
Query: 100 YAVCLVQWKYFI 135
Y VC W YF+
Sbjct: 92 YLVCYGIWVYFV 103
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 19.0 bits (37), Expect = 5.4
Identities = 5/14 (35%), Positives = 9/14 (64%)
Frame = +3
Query: 84 CRTARLRCMFSTVE 125
C TA + C F+ ++
Sbjct: 363 CHTAHIACKFADIK 376
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 18.6 bits (36), Expect = 7.2
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -2
Query: 40 YILFHTFI 17
Y LFHT+I
Sbjct: 246 YYLFHTYI 253
>L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein
protein.
Length = 81
Score = 18.2 bits (35), Expect = 9.5
Identities = 5/14 (35%), Positives = 9/14 (64%)
Frame = -3
Query: 174 EVHDTTHIIEAKCY 133
++H TH + KC+
Sbjct: 33 KMHIRTHTLPCKCH 46
>L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein
protein.
Length = 74
Score = 18.2 bits (35), Expect = 9.5
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = -2
Query: 79 CHLKQTYIHIPNTYILFHT 23
CH + T H T++ HT
Sbjct: 15 CHKRFTRDHHLKTHMRLHT 33
>DQ855486-1|ABH88173.1| 104|Apis mellifera chemosensory protein 5
protein.
Length = 104
Score = 18.2 bits (35), Expect = 9.5
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -1
Query: 161 QLILLKLNAMKYF 123
QLIL + MKY+
Sbjct: 92 QLILRRYKIMKYY 104
>DQ435328-1|ABD92643.1| 143|Apis mellifera OBP11 protein.
Length = 143
Score = 18.2 bits (35), Expect = 9.5
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -3
Query: 180 VGEVHDTTHIIEAKCYEIFP 121
+GE T +EA Y FP
Sbjct: 44 IGETKTTIEDVEATEYGEFP 63
>DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase domain
protein protein.
Length = 448
Score = 18.2 bits (35), Expect = 9.5
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +2
Query: 86 PHSTSTLYV*YSGNI 130
P +T+ LY+ Y+G +
Sbjct: 356 PATTNYLYLTYNGTV 370
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 18.2 bits (35), Expect = 9.5
Identities = 7/19 (36%), Positives = 9/19 (47%)
Frame = -3
Query: 93 LCGRAVTLNKHTSISLTHI 37
+C V LN H TH+
Sbjct: 318 ICVTVVVLNVHFRSPQTHV 336
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,297
Number of Sequences: 438
Number of extensions: 930
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 42
effective length of database: 127,947
effective search space used: 2558940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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