Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A10
         (414 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   111   5e-26
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   2.7  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   2.7  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   4.7  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   6.1  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    25   6.1  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    24   8.1  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    24   8.1  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  111 bits (266), Expect = 5e-26
 Identities = 50/76 (65%), Positives = 60/76 (78%)
 Frame = +3

Query: 183 LFEKRTKIFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 362
           LF  R + F IGQDIQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLDK 
Sbjct: 26  LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKN 85

Query: 363 TAKGLFKILEKYRPET 410
           TA  +FK+L KYRPET
Sbjct: 86  TATQVFKLLNKYRPET 101


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 291 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 392
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 304 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTG 402
           S V   R Q+TSSP + ++PQ KV +  +   G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +3

Query: 363 TAKGLFKILEKYR 401
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +1

Query: 184 YSRREQRSLLLARTSSQPEIYPVSCDGRNIFASSVKRLCYSVVSKCRRQSTSSP 345
           +SR E+    +   S QP    +S   ++I +S    +  SV S   R    SP
Sbjct: 546 FSRLEELGENIPAISKQPSYLSISSSSKSINSSPSPSIQLSVSSSISRDKNLSP 599


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 186 FEKRTKIFAIGQDIQPTRDLSRFV 257
           FE+R ++FA    IQP  D+   V
Sbjct: 181 FERRNRMFASSARIQPNEDVQSVV 204


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 301 NTAF*RWMRIYFGHRTKRDRSLVGWMSW 218
           N  F R +R+YF    + DRSL  +  W
Sbjct: 171 NANFLRQLRVYFECNYQLDRSLRPYRQW 198


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 289 KRLCYSVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKL 411
           K+L   ++ K R Q T SP       P   + SW + GQ+L
Sbjct: 140 KQLVRDILEKAR-QHTISPLDEQDSGPSSLASSWASVGQRL 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,641,272
Number of Sequences: 5004
Number of extensions: 29874
Number of successful extensions: 81
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)