Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_A10
(414 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 107 5e-24
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 107 5e-24
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 92 1e-19
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645... 28 3.4
10_08_1025 - 22391267-22391767,22392641-22392736,22392838-223931... 27 4.5
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 27 4.5
02_02_0451 + 10387353-10387580,10387675-10387934,10388160-103884... 27 5.9
10_08_0902 - 21449748-21449993,21450136-21450460,21450658-214509... 27 7.8
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569... 27 7.8
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 107 bits (256), Expect = 5e-24
Identities = 48/75 (64%), Positives = 59/75 (78%)
Frame = +3
Query: 183 LFEKRTKIFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 362
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 24 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 83
Query: 363 TAKGLFKILEKYRPE 407
A LFK+L KYRPE
Sbjct: 84 LATNLFKMLLKYRPE 98
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 107 bits (256), Expect = 5e-24
Identities = 48/75 (64%), Positives = 59/75 (78%)
Frame = +3
Query: 183 LFEKRTKIFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 362
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 8 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 67
Query: 363 TAKGLFKILEKYRPE 407
A LFK+L KYRPE
Sbjct: 68 LATNLFKMLLKYRPE 82
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 92.3 bits (219), Expect = 1e-19
Identities = 43/77 (55%), Positives = 56/77 (72%)
Frame = +3
Query: 183 LFEKRTKIFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 362
LFEKR K F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK
Sbjct: 25 LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKN 84
Query: 363 TAKGLFKILEKYRPETE 413
++L++ + E E
Sbjct: 85 LGCQKERLLKRAQAEAE 101
>11_03_0212 -
11761856-11762037,11762302-11762398,11763571-11764545,
11766172-11766263,11766450-11766510
Length = 468
Score = 27.9 bits (59), Expect = 3.4
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +3
Query: 213 IGQDIQPTRDLSRFVRWPKYIRI-QRQKAVLQRRLKVPPP--INQFTQTLDK-TTAKGLF 380
+GQD + ++ +V+ Y I Q+ + +L RLK PP + TQ + K K
Sbjct: 355 MGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPPAWTAKHTQAVKKIKNCKAAK 414
Query: 381 KILEK 395
+L+K
Sbjct: 415 DVLQK 419
>10_08_1025 -
22391267-22391767,22392641-22392736,22392838-22393106,
22393257-22393431,22393503-22393718,22393819-22393926,
22394020-22394544,22394631-22394819,22394924-22395041,
22395172-22395437,22395521-22395658
Length = 866
Score = 27.5 bits (58), Expect = 4.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 4 RGADSFGVRNRSRIYSWPLD 63
RGA+ V +R++SWP+D
Sbjct: 357 RGAEVMAVEEHARMFSWPVD 376
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 227 PANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQ 334
P NQ P +Y+H AS G V ANQ
Sbjct: 317 PVNQGQFPPAVQTNLYNHAASSGGVREQVHLTQANQ 352
>02_02_0451 +
10387353-10387580,10387675-10387934,10388160-10388484,
10388819-10389061
Length = 351
Score = 27.1 bits (57), Expect = 5.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 191 EENKDLCYWPGHPANQRSI 247
+E +DL +WP HP + R +
Sbjct: 147 KEEQDLAFWPDHPESFRDV 165
>10_08_0902 -
21449748-21449993,21450136-21450460,21450658-21450905,
21451091-21451324
Length = 350
Score = 26.6 bits (56), Expect = 7.8
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +2
Query: 194 ENKDLCYWPGHPANQRS 244
E++DL +WP HP++ R+
Sbjct: 146 ESRDLRFWPAHPSSFRN 162
>03_02_0112 +
5689439-5689474,5689629-5689778,5690194-5690361,
5691334-5691458,5691914-5692007,5692844-5692942,
5693730-5693910,5694051-5694166,5694758-5694913,
5695226-5695354,5695554-5695718
Length = 472
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 293 LLTLDANIFRPSHETG*ISGWL 228
LLT + N RPSH + GW+
Sbjct: 102 LLTKNPNFVRPSHRLNEVQGWV 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,982,125
Number of Sequences: 37544
Number of extensions: 207183
Number of successful extensions: 609
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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