Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_A10
(414 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 115 1e-26
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 115 1e-26
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 115 2e-26
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 95 2e-20
AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein. 31 0.33
AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein. 31 0.33
AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cel... 31 0.33
AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cel... 31 0.33
Z77133-2|CAB00864.2| 664|Caenorhabditis elegans Hypothetical pr... 26 9.4
X77495-1|CAA54629.1| 402|Caenorhabditis elegans lag-2 protein. 26 9.4
AC024205-1|AAF36047.1| 402|Caenorhabditis elegans Lin-12 and gl... 26 9.4
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 115 bits (277), Expect = 1e-26
Identities = 50/76 (65%), Positives = 63/76 (82%)
Frame = +3
Query: 183 LFEKRTKIFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 362
LFEKR + F IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91
Query: 363 TAKGLFKILEKYRPET 410
+A+ FK+L+KYRPE+
Sbjct: 92 SARQAFKLLDKYRPES 107
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 115 bits (277), Expect = 1e-26
Identities = 50/76 (65%), Positives = 63/76 (82%)
Frame = +3
Query: 183 LFEKRTKIFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 362
LFEKR + F IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91
Query: 363 TAKGLFKILEKYRPET 410
+A+ FK+L+KYRPE+
Sbjct: 92 SARQAFKLLDKYRPES 107
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 115 bits (276), Expect = 2e-26
Identities = 50/76 (65%), Positives = 63/76 (82%)
Frame = +3
Query: 183 LFEKRTKIFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 362
LFEKR + F IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSH 194
Query: 363 TAKGLFKILEKYRPET 410
+A+ FK+L+KYRPE+
Sbjct: 195 SARQAFKLLDKYRPES 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 94.7 bits (225), Expect = 2e-20
Identities = 41/58 (70%), Positives = 49/58 (84%)
Frame = +3
Query: 183 LFEKRTKIFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 356
LFEKR + F IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein.
Length = 691
Score = 31.1 bits (67), Expect = 0.33
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +2
Query: 113 DREKSSGRSTCGEES*AQEDCKPSIREENKDLCYWPGHPANQRSIPFRAMAEIYSHPASK 292
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 31 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 88
Query: 293 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 388
G AS+Q++ A+ P++ + + QD+
Sbjct: 89 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 120
>AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein.
Length = 728
Score = 31.1 bits (67), Expect = 0.33
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +2
Query: 113 DREKSSGRSTCGEES*AQEDCKPSIREENKDLCYWPGHPANQRSIPFRAMAEIYSHPASK 292
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 293 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 388
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform b protein.
Length = 512
Score = 31.1 bits (67), Expect = 0.33
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +2
Query: 113 DREKSSGRSTCGEES*AQEDCKPSIREENKDLCYWPGHPANQRSIPFRAMAEIYSHPASK 292
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 293 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 388
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform a protein.
Length = 728
Score = 31.1 bits (67), Expect = 0.33
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +2
Query: 113 DREKSSGRSTCGEES*AQEDCKPSIREENKDLCYWPGHPANQRSIPFRAMAEIYSHPASK 292
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 293 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 388
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>Z77133-2|CAB00864.2| 664|Caenorhabditis elegans Hypothetical
protein K03A11.4 protein.
Length = 664
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +3
Query: 228 QPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRP 404
+PT D+S +++ ++ + + Q R +P ++ FT +D + K+ E RP
Sbjct: 188 KPTIDISSLMQFDVFVILLDSLSYSQGRRALPRTLSYFTNHMDGVIFPYVNKVGENSRP 246
>X77495-1|CAA54629.1| 402|Caenorhabditis elegans lag-2 protein.
Length = 402
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +3
Query: 189 EKRTKIFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPIN 335
E + K+F I +Q + R+ P+ + AV+Q+ PP ++
Sbjct: 344 EAQKKVFTIEGSVQKIDEEVRYTSAPRKYESNNEYAVIQKSTPPPPSLS 392
>AC024205-1|AAF36047.1| 402|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein2 protein.
Length = 402
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +3
Query: 189 EKRTKIFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPIN 335
E + K+F I +Q + R+ P+ + AV+Q+ PP ++
Sbjct: 344 EAQKKVFTIEGSVQKIDEEVRYTSAPRKYESNNEYAVIQKSTPPPPSLS 392
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,070,735
Number of Sequences: 27780
Number of extensions: 166366
Number of successful extensions: 399
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -