Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A09
         (171 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    39   1e-04
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8...    25   1.3  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    23   4.1  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   5.4  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    23   5.4  
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    23   7.1  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    23   7.1  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    22   9.4  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    22   9.4  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 38.7 bits (86), Expect = 1e-04
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = -3

Query: 166 HHFGFEAAA*Y*HFVDVV*LFLYISIY 86
           HH GFE    Y HF DVV LFLY++IY
Sbjct: 243 HHNGFECGIYYWHFCDVVWLFLYLTIY 269


>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
           Cut8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 84  DEVINYLKKKQKNSRLV 34
           +E +NYLK+ QKN  LV
Sbjct: 206 EEALNYLKQLQKNEPLV 222


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = +1

Query: 94  KYKEIIILHLQSVNIMQ---LLQIQSDD 168
           KY+EII+ H Q    MQ   LL+I S D
Sbjct: 238 KYEEIIVPHAQRAPQMQGEKLLEISSMD 265


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 97  YKEIIILHLQSVNIMQLLQIQSDDY 171
           Y  I ILH QS++ ++ +++ SD++
Sbjct: 304 YMLIKILHFQSISKIEHIELISDNF 328


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 124 QSVNIMQLLQIQSDDY 171
           QS+N  QLLQI S  Y
Sbjct: 45  QSINASQLLQIPSSTY 60


>SPAC6F12.13c |fps1||geranyltranstransferase
          Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 93 LFTDEVINYLK 61
          +F DE++NYLK
Sbjct: 16 VFVDEIVNYLK 26


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 150 KQLHDIDTL*M*YDYFFIFLFTDEVINYLKKKQKNSRLVLSPSCRIQ 10
           K+LH I  L +  D F     +  +++  KKK   + ++LS +C ++
Sbjct: 141 KRLHSIFILRLFNDGFNSLFSSLFILSSCKKKWVRASILLSVACSVK 187


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 102 FIFLFTDEVINYLKKKQKNSRLVLSPSCRIQA 7
           FI + + E+I++L+K +    L +  SC + A
Sbjct: 238 FIKINSKEIIDFLEKSKTLVELGMDSSCSLVA 269


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 108 YFFIFLFTDEVINYLKKKQKNSRLVLS 28
           Y+F F  T     YLKK+ ++S  +LS
Sbjct: 713 YYFEFFTTTGGEYYLKKEVQHSLYILS 739


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 560,577
Number of Sequences: 5004
Number of extensions: 6779
Number of successful extensions: 27
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 37
effective length of database: 2,177,330
effective search space used: 41369270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)