Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A09
         (171 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1315 - 25722757-25722876,25722972-25723328,25723924-257245...    26   5.0  
07_01_0104 + 796572-796644,796780-796820,797603-797722                 25   8.7  

>07_03_1315 -
           25722757-25722876,25722972-25723328,25723924-25724500,
           25724577-25725265,25725487-25725822,25726190-25726527,
           25726619-25726746,25726906-25727030,25727547-25727589,
           25727714-25727802,25728396-25728511,25729157-25729276,
           25729752-25729794
          Length = 1026

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 22  RGREN*SRVXXXXXXIINYLISK*KYKEIIILHLQSVNIMQ 144
           +G+ N SRV      ++  L     Y  +I+LH Q++++++
Sbjct: 137 KGKNNFSRVASKVSAVLKKLKRVQDYLMLIVLHAQTLSLVR 177


>07_01_0104 + 796572-796644,796780-796820,797603-797722
          Length = 77

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 114 TTSTKCQYHAAASNPK 161
           T+ TKC+ HA A +PK
Sbjct: 50  TSETKCKEHAEAKHPK 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,338,206
Number of Sequences: 37544
Number of extensions: 34855
Number of successful extensions: 58
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 14,793,348
effective HSP length: 36
effective length of database: 13,441,764
effective search space used: 268835280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)