Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_A08
(226 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 68 2e-13
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 68 2e-13
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 0.25
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 1.3
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe... 25 1.8
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ... 25 1.8
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 24 2.4
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 24 2.4
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 23 4.1
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 23 5.4
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc... 23 5.4
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 23 7.2
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 23 7.2
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 67.7 bits (158), Expect = 2e-13
Identities = 29/39 (74%), Positives = 33/39 (84%)
Frame = +3
Query: 108 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSP 224
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSP
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSP 39
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 67.7 bits (158), Expect = 2e-13
Identities = 29/39 (74%), Positives = 33/39 (84%)
Frame = +3
Query: 108 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSP 224
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSP
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSP 39
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 27.5 bits (58), Expect = 0.25
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 202 ILGAKEDVAPTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPM 53
I+ + ++ T+ PTHL L SN+ NNK+ N+SKP+
Sbjct: 449 IMDLTQPISSTNAPTHLNEDDLNQFTSNISSSSKPRKDNNKTA-NSSKPI 497
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.0 bits (52), Expect = 1.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 127 GSNLGGIVLTNYCNNKSLYNNSKPMNLDIKGVQPSK 20
GS + G+VL+N K + LD+ VQ K
Sbjct: 92 GSQVAGLVLSNRSGLKGREPKKSQLGLDVLAVQKKK 127
>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 551
Score = 24.6 bits (51), Expect = 1.8
Identities = 7/13 (53%), Positives = 12/13 (92%)
Frame = +1
Query: 187 PWLLKSVPLVSPQ 225
PW +K++PLV+P+
Sbjct: 462 PWNIKNIPLVTPE 474
>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 215 TKGTDFRSQGGRSTDFSTN 159
T G D S GGR+ D+ST+
Sbjct: 118 TGGNDSYSSGGRNEDYSTS 136
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 24.2 bits (50), Expect = 2.4
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -1
Query: 148 LTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNLD 44
L++ I GG+V C + + N K NLD
Sbjct: 693 LSLGIDAAKRAGGVVEATMCYSGDMLNPKKKYNLD 727
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 24.2 bits (50), Expect = 2.4
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -1
Query: 211 RGPILGAKEDVAPTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNLD 44
R LG+K+ + + PP H L+ + + S G + N+S ++S M D
Sbjct: 268 RSVSLGSKDYLKSSHPPVHKTLSQSVLVLSKDGNASSSGGTENQSANSSSSLMEKD 323
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 117 KFDPNEIKIVNLRCVGG 167
+F+P +KIVNL +GG
Sbjct: 203 RFEPGVMKIVNLIPIGG 219
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 140 NRQLKMCWWRSRCYVLLGS*NRSPWSL 220
NR C R Y+ G NRSPW++
Sbjct: 286 NRLPMHCRDHWRDYIQPGEINRSPWTI 312
>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 364
Score = 23.0 bits (47), Expect = 5.4
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -2
Query: 108 LCLLITVITRVYIIIPSR 55
LC ++T + + I+ PSR
Sbjct: 134 LCAMVTTVEKTAIVFPSR 151
>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 22.6 bits (46), Expect = 7.2
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Frame = -1
Query: 205 PILGAKEDVA--PTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNLDIKGV 32
P++ + ++ P + P++ ++L N T YC + + ++ P L V
Sbjct: 422 PVINSSSSLSGSPITLPSNTAFEFNVTLSINYTEGCTTGYCLGRIIIDSDDPYRLQSISV 481
Query: 31 QPSKRTKTLV 2
TLV
Sbjct: 482 DVDFAASTLV 491
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 133 SLGSNLGGIVLTNYCNNKSLYNNSKP 56
++GSN G T+ +K+ NN+KP
Sbjct: 241 NVGSNSKGSPTTSIPEHKTSINNNKP 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 888,079
Number of Sequences: 5004
Number of extensions: 13547
Number of successful extensions: 37
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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