Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_A08
(226 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 62 6e-11
02_05_0416 + 28791512-28792012 62 6e-11
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 29 0.67
04_04_0111 - 22842337-22842648,22843008-22843402,22843732-228440... 28 0.88
08_01_0500 + 4338111-4338195,4339910-4340042,4340116-4340187,434... 28 1.2
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443... 27 1.5
03_05_0441 + 24350026-24350081,24350186-24351011,24351088-243511... 27 1.5
04_01_0528 - 6917414-6919849 27 2.0
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435... 27 2.7
04_01_0530 - 6928528-6929500,6929514-6930964 27 2.7
10_08_0387 + 17452877-17452984,17453059-17453124 26 3.6
08_02_1556 - 27852247-27852738,27853005-27853197,27854006-278540... 26 4.7
06_01_0739 + 5468642-5468857,5468978-5469051,5469651-5470083 25 6.2
04_01_0160 + 1830671-1830779,1830898-1830971,1831374-1831671,183... 25 6.2
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545... 25 8.2
07_03_0313 + 16620817-16621515 25 8.2
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 25 8.2
>04_04_1026 + 30214437-30214937
Length = 166
Score = 62.1 bits (144), Expect = 6e-11
Identities = 28/39 (71%), Positives = 31/39 (79%)
Frame = +3
Query: 108 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSP 224
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSP
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSP 39
>02_05_0416 + 28791512-28792012
Length = 166
Score = 62.1 bits (144), Expect = 6e-11
Identities = 28/39 (71%), Positives = 31/39 (79%)
Frame = +3
Query: 108 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSP 224
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSP
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSP 39
>02_01_0190 +
1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 28.7 bits (61), Expect = 0.67
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = -1
Query: 211 RGPILGAKEDVAPTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNLDIKGV 32
R P K +P+ P + + S + L +V + NN + ++SKP+ +GV
Sbjct: 80 RAPAPSPKPSPSPSPSP---RRSTSASPSATLSSLVSRTFSNNAASSSSSKPLPSLFRGV 136
Query: 31 QPSKR 17
+PS +
Sbjct: 137 RPSPK 141
>04_04_0111 -
22842337-22842648,22843008-22843402,22843732-22844073,
22844154-22844282,22844402-22844514,22844596-22844667,
22844783-22844859,22844978-22845052,22845058-22845121,
22845332-22845403,22845496-22845628,22846859-22846961
Length = 628
Score = 28.3 bits (60), Expect = 0.88
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -1
Query: 208 GPILGAKEDVAPTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNL 47
G + + P PP + I+LGS G L ++C+ K ++ + K N+
Sbjct: 386 GSVASRLRERQPNDPPLEWQTRTRIALGSARGLSYLHDHCDPKIIHRDVKAANI 439
>08_01_0500 +
4338111-4338195,4339910-4340042,4340116-4340187,
4340524-4340587,4341383-4341459,4341586-4341657,
4341741-4341853,4341995-4342126,4342204-4342545,
4342628-4343022,4343293-4343603,4343967-4344066
Length = 631
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -1
Query: 208 GPILGAKEDVAPTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNL 47
G + + P+ PP + I+LGS G L ++C+ K ++ + K N+
Sbjct: 356 GSVASRLRERPPSEPPLDWRTRRRIALGSARGLSYLHDHCDPKIIHRDVKAANI 409
>08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,
4437721-4437990,4438168-4438605,4438772-4439043,
4439126-4439274,4439339-4439470,4439554-4439880,
4439963-4440357,4440551-4440861,4441304-4441394,
4441806-4441847
Length = 1686
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -1
Query: 208 GPILGAKEDVAPTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNL 47
G + + P+ PP + I+ GS G L ++CN K ++ + K N+
Sbjct: 1400 GSVASRLRERPPSEPPLDWQTRRRIAAGSARGLSYLHDHCNPKIIHRDVKAANI 1453
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = -1
Query: 175 PTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNL 47
P+ P + + I+LGS G L ++C+ K ++ + + +N+
Sbjct: 986 PSQAPLDWQTRLRIALGSARGLSYLHDHCDPKIIHRDIRAVNI 1028
>03_05_0441 +
24350026-24350081,24350186-24351011,24351088-24351189,
24351278-24351343,24351418-24351483,24351594-24351800,
24351925-24352086
Length = 494
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 214 PRGPILGAKEDVAPTSPPTHLKLTI 140
PR P + A + V PT P HL L +
Sbjct: 408 PRMPFMAAPQPVVPTPPVNHLDLGV 432
>04_01_0528 - 6917414-6919849
Length = 811
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 157 HLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNL 47
H L + ++LG + G L CN + ++ + KP N+
Sbjct: 615 HWSLRVQVALGVSRGLFYLHEECNKQIIHCDMKPQNI 651
>08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,
4351133-4353092,4353465-4353840,4353932-4354326,
4354597-4354765,4355444-4355518,4357699-4357826,
4357988-4358213,4358290-4358417,4358505-4358768
Length = 1520
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 175 PTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNLDI 41
P PP + I+LGS G L ++C+ K ++ + K N+ +
Sbjct: 1063 PYEPPLDWRTRRRIALGSARGLSYLHDHCDPKIIHRDVKAANISL 1107
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 157 HLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNL 47
H L + ++LG G + L CN + ++ + KP N+
Sbjct: 611 HWSLRVQVALGVARGLLYLHEECNKQIIHCDMKPQNI 647
>10_08_0387 + 17452877-17452984,17453059-17453124
Length = 57
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 154 DVLVEKSVLRPPWLLKSVPLV 216
D +VLRPPWLL +P +
Sbjct: 4 DYAAAAAVLRPPWLLDLLPFL 24
>08_02_1556 -
27852247-27852738,27853005-27853197,27854006-27854070,
27854161-27854199,27854572-27854592,27854819-27855052,
27855420-27855504,27855953-27856026,27856516-27856647,
27856735-27856834,27857296-27857361,27857472-27857509,
27858013-27858219,27858378-27858427,27858871-27858940,
27859065-27859133,27859456-27859530,27860456-27860530,
27860887-27860934
Length = 710
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 212 KGTDFRSQGGRSTDFSTNTS*VDD 141
+ TDF SQ +S+DFS + + ++D
Sbjct: 626 RDTDFESQHEKSSDFSVSITAIED 649
>06_01_0739 + 5468642-5468857,5468978-5469051,5469651-5470083
Length = 240
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 144 VNLRCVGGEVGATSSLAPKIGP 209
V L C GGEVG+ S A + P
Sbjct: 98 VPLPCTGGEVGSKSEPAAAVAP 119
>04_01_0160 +
1830671-1830779,1830898-1830971,1831374-1831671,
1831900-1832867,1833504-1833716,1834034-1834237,
1835063-1835104
Length = 635
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 173 DFSTNTS*VDDFNFIRIKFRRHCA 102
D+ TS +DDFNF K CA
Sbjct: 569 DYDQETSLLDDFNFYEEKESARCA 592
>11_01_0669 -
5454116-5454153,5454569-5454770,5454865-5455029,
5455278-5456183
Length = 436
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 120 FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGL 218
F N +KIV ++C G EV +G G+
Sbjct: 375 FVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGI 407
>07_03_0313 + 16620817-16621515
Length = 232
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 202 ILGAKEDVAPTSPPTHLKLTILI 134
+LGAK D+ S P H K+ +L+
Sbjct: 38 LLGAKSDLLLRSNPIHAKVPVLL 60
>01_06_1513 -
37884198-37884485,37884966-37886951,37886976-37887305,
37887397-37887471,37887543-37887734,37887922-37888173,
37888248-37888803,37888881-37889088,37889624-37889736,
37890029-37890060,37890545-37890619
Length = 1368
Score = 25.0 bits (52), Expect = 8.2
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -1
Query: 211 RGPILGAKEDVAPTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNLDIKGV 32
RGP G +E P P+ + L N+ T++ +SLY ++ +KG
Sbjct: 201 RGPF-GQRE--GPLDSPSSSSFSTSPYLDQNISKSRKTSHGARESLYWGARENKQKVKGS 257
Query: 31 QPSKRT 14
P K+T
Sbjct: 258 DPVKKT 263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,919,425
Number of Sequences: 37544
Number of extensions: 87332
Number of successful extensions: 251
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -