Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_A08
(226 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB209471-1|BAD92708.1| 197|Homo sapiens ribosomal protein L12 v... 84 9e-17
L06505-1|AAA36157.1| 165|Homo sapiens ribosomal protein L12 pro... 80 1e-15
BC105603-1|AAI05604.1| 165|Homo sapiens ribosomal protein L12 p... 80 1e-15
BC094831-1|AAH94831.1| 165|Homo sapiens ribosomal protein L12 p... 80 1e-15
BC050644-1|AAH50644.1| 165|Homo sapiens ribosomal protein L12 p... 80 1e-15
AL445222-15|CAH72929.1| 165|Homo sapiens ribosomal protein L12 ... 80 1e-15
AL021366-3|CAA16156.1| 165|Homo sapiens cICK0721Q.2 (60S Riboso... 77 1e-14
BC059950-1|AAH59950.1| 132|Homo sapiens RPL12 protein protein. 76 2e-14
AL133410-17|CAI10994.1| 702|Homo sapiens chromosome 9 open read... 30 1.2
X85108-1|CAA59429.1| 1331|Homo sapiens alpha3b subunit of lamini... 29 3.5
X85107-1|CAA59428.1| 1238|Homo sapiens alpha3a subunit of lamini... 29 3.5
X84900-1|CAA59325.1| 1806|Homo sapiens alpha 3B chain of laminin... 27 8.2
L34155-1|AAA59483.1| 1713|Homo sapiens epiligrin alpha 3 subunit... 27 8.2
AY327116-1|AAQ72571.1| 3277|Homo sapiens laminin alpha 3 splice ... 27 8.2
AY327115-1|AAQ72570.1| 3333|Homo sapiens laminin alpha 3 splice ... 27 8.2
AY327114-1|AAQ72569.1| 1668|Homo sapiens laminin alpha 3 splice ... 27 8.2
AB208853-1|BAD92090.1| 1408|Homo sapiens Laminin alpha 3b chain ... 27 8.2
AB107369-1|BAD13428.1| 3333|Homo sapiens laminin alpha 3b chain ... 27 8.2
>AB209471-1|BAD92708.1| 197|Homo sapiens ribosomal protein L12
variant protein.
Length = 197
Score = 83.8 bits (198), Expect = 9e-17
Identities = 37/41 (90%), Positives = 39/41 (95%)
Frame = +3
Query: 102 STMPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSP 224
STMPPKFDPNEIK+V LRC GGEVGATS+LAPKIGPLGLSP
Sbjct: 31 STMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSP 71
>L06505-1|AAA36157.1| 165|Homo sapiens ribosomal protein L12
protein.
Length = 165
Score = 80.2 bits (189), Expect = 1e-15
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = +3
Query: 108 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSP 224
MPPKFDPNEIK+V LRC GGEVGATS+LAPKIGPLGLSP
Sbjct: 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSP 39
>BC105603-1|AAI05604.1| 165|Homo sapiens ribosomal protein L12
protein.
Length = 165
Score = 80.2 bits (189), Expect = 1e-15
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = +3
Query: 108 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSP 224
MPPKFDPNEIK+V LRC GGEVGATS+LAPKIGPLGLSP
Sbjct: 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSP 39
>BC094831-1|AAH94831.1| 165|Homo sapiens ribosomal protein L12
protein.
Length = 165
Score = 80.2 bits (189), Expect = 1e-15
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = +3
Query: 108 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSP 224
MPPKFDPNEIK+V LRC GGEVGATS+LAPKIGPLGLSP
Sbjct: 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSP 39
>BC050644-1|AAH50644.1| 165|Homo sapiens ribosomal protein L12
protein.
Length = 165
Score = 80.2 bits (189), Expect = 1e-15
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = +3
Query: 108 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSP 224
MPPKFDPNEIK+V LRC GGEVGATS+LAPKIGPLGLSP
Sbjct: 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSP 39
>AL445222-15|CAH72929.1| 165|Homo sapiens ribosomal protein L12
protein.
Length = 165
Score = 80.2 bits (189), Expect = 1e-15
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = +3
Query: 108 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSP 224
MPPKFDPNEIK+V LRC GGEVGATS+LAPKIGPLGLSP
Sbjct: 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSP 39
>AL021366-3|CAA16156.1| 165|Homo sapiens cICK0721Q.2 (60S Ribosomal
Protein L12 LIKE protein) protein.
Length = 165
Score = 77.0 bits (181), Expect = 1e-14
Identities = 34/39 (87%), Positives = 36/39 (92%)
Frame = +3
Query: 108 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSP 224
MPPKFDPNEIK+V LRC GEVGATS+LAPKIGPLGLSP
Sbjct: 1 MPPKFDPNEIKVVYLRCTRGEVGATSALAPKIGPLGLSP 39
>BC059950-1|AAH59950.1| 132|Homo sapiens RPL12 protein protein.
Length = 132
Score = 75.8 bits (178), Expect = 2e-14
Identities = 33/37 (89%), Positives = 35/37 (94%)
Frame = +3
Query: 108 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGL 218
MPPKFDPNEIK+V LRC GGEVGATS+LAPKIGPLGL
Sbjct: 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGL 37
>AL133410-17|CAI10994.1| 702|Homo sapiens chromosome 9 open reading
frame 127 protein.
Length = 702
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -1
Query: 223 GERPRGPILGAKEDVAPTSPPTHLKLTILISLGSNLGGIVLTNY--CNNKSL 74
GER RGP L + + PP L L + LG GG+ LT+Y C+ + L
Sbjct: 50 GERSRGPRLKSGFQL----PPALLLLLLFSVLGPGAGGLFLTDYSTCSPRKL 97
>X85108-1|CAA59429.1| 1331|Homo sapiens alpha3b subunit of laminin 5
protein.
Length = 1331
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 163 PTHLKLTILISLGSNLGGIVLTNYCNNK-SLYNNSKPMNLDIKGVQPSKRTK 11
P KL +S G I L + N SLYN K NL+ VQP +R K
Sbjct: 1017 PPDFKLPSRLSFPPYKGCIELDDLNENVLSLYNFKKTFNLNTTEVQPCRRRK 1068
>X85107-1|CAA59428.1| 1238|Homo sapiens alpha3a subunit of laminin 5
protein.
Length = 1238
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 163 PTHLKLTILISLGSNLGGIVLTNYCNNK-SLYNNSKPMNLDIKGVQPSKRTK 11
P KL +S G I L + N SLYN K NL+ VQP +R K
Sbjct: 924 PPDFKLPSRLSFPPYKGCIELDDLNENVLSLYNFKKTFNLNTTEVQPCRRRK 975
>X84900-1|CAA59325.1| 1806|Homo sapiens alpha 3B chain of laminin-5
protein.
Length = 1806
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 163 PTHLKLTILISLGSNLGGIVLTNYCNNK-SLYNNSKPMNLDIKGVQPSKRTK 11
P KL +S G I L + N SLYN K NL+ V+P +R K
Sbjct: 1017 PPDFKLPSRLSFPPYKGCIELDDLNENVLSLYNFKKTFNLNTTEVEPCRRRK 1068
>L34155-1|AAA59483.1| 1713|Homo sapiens epiligrin alpha 3 subunit
protein.
Length = 1713
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 163 PTHLKLTILISLGSNLGGIVLTNYCNNK-SLYNNSKPMNLDIKGVQPSKRTK 11
P KL +S G I L + N SLYN K NL+ V+P +R K
Sbjct: 924 PPDFKLPSRLSFPPYKGCIELDDLNENVLSLYNFKKTFNLNTTEVEPCRRRK 975
>AY327116-1|AAQ72571.1| 3277|Homo sapiens laminin alpha 3 splice
variant b2 protein.
Length = 3277
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 163 PTHLKLTILISLGSNLGGIVLTNYCNNK-SLYNNSKPMNLDIKGVQPSKRTK 11
P KL +S G I L + N SLYN K NL+ V+P +R K
Sbjct: 2488 PPDFKLPSRLSFPPYKGCIELDDLNENVLSLYNFKKTFNLNTTEVEPCRRRK 2539
>AY327115-1|AAQ72570.1| 3333|Homo sapiens laminin alpha 3 splice
variant b1 protein.
Length = 3333
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 163 PTHLKLTILISLGSNLGGIVLTNYCNNK-SLYNNSKPMNLDIKGVQPSKRTK 11
P KL +S G I L + N SLYN K NL+ V+P +R K
Sbjct: 2544 PPDFKLPSRLSFPPYKGCIELDDLNENVLSLYNFKKTFNLNTTEVEPCRRRK 2595
>AY327114-1|AAQ72569.1| 1668|Homo sapiens laminin alpha 3 splice
variant a protein.
Length = 1668
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 163 PTHLKLTILISLGSNLGGIVLTNYCNNK-SLYNNSKPMNLDIKGVQPSKRTK 11
P KL +S G I L + N SLYN K NL+ V+P +R K
Sbjct: 879 PPDFKLPSRLSFPPYKGCIELDDLNENVLSLYNFKKTFNLNTTEVEPCRRRK 930
>AB208853-1|BAD92090.1| 1408|Homo sapiens Laminin alpha 3b chain
variant protein.
Length = 1408
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 163 PTHLKLTILISLGSNLGGIVLTNYCNNK-SLYNNSKPMNLDIKGVQPSKRTK 11
P KL +S G I L + N SLYN K NL+ V+P +R K
Sbjct: 619 PPDFKLPSRLSFPPYKGCIELDDLNENVLSLYNFKKTFNLNTTEVEPCRRRK 670
>AB107369-1|BAD13428.1| 3333|Homo sapiens laminin alpha 3b chain
protein.
Length = 3333
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 163 PTHLKLTILISLGSNLGGIVLTNYCNNK-SLYNNSKPMNLDIKGVQPSKRTK 11
P KL +S G I L + N SLYN K NL+ V+P +R K
Sbjct: 2544 PPDFKLPSRLSFPPYKGCIELDDLNENVLSLYNFKKTFNLNTTEVEPCRRRK 2595
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,444,691
Number of Sequences: 237096
Number of extensions: 474814
Number of successful extensions: 4834
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4834
length of database: 76,859,062
effective HSP length: 53
effective length of database: 64,292,974
effective search space used: 1350152454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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