Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A08
         (226 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...    79   3e-16
AL021491-2|CAA16375.1|  319|Caenorhabditis elegans Hypothetical ...    27   2.4  
AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical ...    26   3.1  
AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical ...    26   3.1  
AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical ...    26   3.1  
AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical ...    26   4.1  
AF016429-4|AAB65363.1|  881|Caenorhabditis elegans Patched relat...    26   4.1  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score = 79.4 bits (187), Expect = 3e-16
 Identities = 35/39 (89%), Positives = 37/39 (94%)
 Frame = +3

Query: 108 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSP 224
           MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSP
Sbjct: 1   MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSP 39


>AL021491-2|CAA16375.1|  319|Caenorhabditis elegans Hypothetical
           protein Y44A6B.3 protein.
          Length = 319

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 149 LKMCWWRSRCYVLLGS*N 202
           LK+C+W S C V+L S N
Sbjct: 47  LKICFWDSNCLVILDSEN 64


>AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7b protein.
          Length = 287

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +3

Query: 159 VGGEVGATSSLAPKIG 206
           VGG VGATSS AP  G
Sbjct: 42  VGGSVGATSSAAPSGG 57


>AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7a protein.
          Length = 277

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +3

Query: 159 VGGEVGATSSLAPKIG 206
           VGG VGATSS AP  G
Sbjct: 32  VGGSVGATSSAAPSGG 47


>AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7c protein.
          Length = 414

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +3

Query: 159 VGGEVGATSSLAPKIG 206
           VGG VGATSS AP  G
Sbjct: 32  VGGSVGATSSAAPSGG 47


>AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical
           protein C36C9.1 protein.
          Length = 832

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = -1

Query: 205 PILGAKEDVAPTSPPTHL--KLTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNLDIKGV 32
           P   + +D  PTSPP  +   LT  +    +    +  +Y     L      +NL+I G+
Sbjct: 644 PTEDSSQDAPPTSPPPRISDSLTAFLEAQQDFNDYIDAHYKEKTQLLK----VNLNIHGM 699

Query: 31  QPSK 20
            P +
Sbjct: 700 SPER 703


>AF016429-4|AAB65363.1|  881|Caenorhabditis elegans Patched related
           family protein 16 protein.
          Length = 881

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 145 TILISLGSNLGGIVLTNYCNNKSLYNNSKPMN 50
           T+  S+G N   I L ++    SLY+N+K  N
Sbjct: 489 TLPYSMGKNSTSIWLRSFLYQSSLYHNNKGFN 520


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,906,840
Number of Sequences: 27780
Number of extensions: 73663
Number of successful extensions: 213
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)