Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A07
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...   163   8e-42
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...   163   8e-42
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...   124   6e-30
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...   121   4e-29
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    95   4e-21
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    58   8e-10
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    54   1e-08
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    32   0.033
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    25   5.0  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   5.0  
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr...    24   8.8  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    24   8.8  

>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score =  163 bits (397), Expect = 8e-42
 Identities = 81/125 (64%), Positives = 93/125 (74%)
 Frame = +2

Query: 11  RARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 190
           RARFEEL ADLFR+TMEPVEK LRD+K+DK+ +++IVLVGGSTRIP++QKL+ DFFNGKE
Sbjct: 297 RARFEELCADLFRNTMEPVEKVLRDSKIDKSSVNEIVLVGGSTRIPRIQKLVSDFFNGKE 356

Query: 191 LNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNS 370
             KSINPDE           IL GD SE+ QD           GIETAGGVMT LIKRN+
Sbjct: 357 PCKSINPDEAVAYGAAVQAAILVGDTSEKTQDLLLLDVAPLSLGIETAGGVMTPLIKRNT 416

Query: 371 TIPTK 385
           TIPTK
Sbjct: 417 TIPTK 421



 Score = 29.9 bits (64), Expect = 0.18
 Identities = 10/17 (58%), Positives = 16/17 (94%)
 Frame = +3

Query: 384 RQTQTFNTYSDNQPGVL 434
           ++++ F+TY+DNQPGVL
Sbjct: 421 KKSEVFSTYADNQPGVL 437


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score =  163 bits (397), Expect = 8e-42
 Identities = 81/125 (64%), Positives = 92/125 (73%)
 Frame = +2

Query: 11  RARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 190
           RARFEEL ADLFR TMEPVE+ LRD+K+DKA +++IVLVGGSTRIP+VQKL+ DFFNGKE
Sbjct: 297 RARFEELCADLFRKTMEPVERVLRDSKVDKASVNEIVLVGGSTRIPRVQKLVSDFFNGKE 356

Query: 191 LNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNS 370
             KSINPDE           +L GD SE+ QD           GIETAGGVMT LIKRN+
Sbjct: 357 PCKSINPDEAVAYGAAVQAAVLTGDTSEKTQDLLLLDVAPLSMGIETAGGVMTPLIKRNT 416

Query: 371 TIPTK 385
           TIPTK
Sbjct: 417 TIPTK 421



 Score = 30.7 bits (66), Expect = 0.10
 Identities = 11/17 (64%), Positives = 16/17 (94%)
 Frame = +3

Query: 384 RQTQTFNTYSDNQPGVL 434
           ++++ F+TYSDNQPGVL
Sbjct: 421 KKSEIFSTYSDNQPGVL 437


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score =  124 bits (299), Expect = 6e-30
 Identities = 62/126 (49%), Positives = 85/126 (67%)
 Frame = +2

Query: 8   ARARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK 187
           +RA+FEE+N DLF+ T++PVE+ L+D+ + K++I DIVLVGGSTRIPKVQ+LL+ FF GK
Sbjct: 328 SRAKFEEINMDLFKKTLKPVEQVLKDSNLKKSEIDDIVLVGGSTRIPKVQELLESFF-GK 386

Query: 188 ELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRN 367
           + +K INPDE           +L G++  +  +           GIET GGVMT LI RN
Sbjct: 387 KASKGINPDEAVAYGAAVQAGVLSGEEGSD--NIVLLDVIPLTLGIETTGGVMTKLIGRN 444

Query: 368 STIPTK 385
           + IPT+
Sbjct: 445 TPIPTR 450


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score =  121 bits (292), Expect = 4e-29
 Identities = 59/125 (47%), Positives = 80/125 (64%), Gaps = 1/125 (0%)
 Frame = +2

Query: 11  RARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 190
           RARFE++NA  F++T++PV K L+D+K+ KA +HDIVLVGGSTRIPKVQ+L+ DFF+G+ 
Sbjct: 301 RARFEDINATTFKATIDPVAKVLKDSKVPKADVHDIVLVGGSTRIPKVQRLVSDFFDGRA 360

Query: 191 LNKSINPDEXXXXXXXXXXXIL-HGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRN 367
           LNKSINPDE           +L +   S++ QD           G+   G V   +  RN
Sbjct: 361 LNKSINPDEAVAYGAAVQAAVLTNKADSDKTQDLLLLDVVPLSLGVAMEGNVFGVVCPRN 420

Query: 368 STIPT 382
           + IPT
Sbjct: 421 TPIPT 425


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 95.1 bits (226), Expect = 4e-21
 Identities = 49/126 (38%), Positives = 76/126 (60%)
 Frame = +2

Query: 8   ARARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK 187
           +RA+FE+L   L R T++P +++L+DA +  ++I++++LVGG TR+P+V + ++  F  +
Sbjct: 344 SRAQFEKLVDPLVRRTIDPCKRALKDANLQTSEINEVILVGGMTRMPRVVETVKSIFK-R 402

Query: 188 ELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRN 367
           E  KS+NPDE           +L G     V+D           GIET GGV T LI RN
Sbjct: 403 EPAKSVNPDEAVAIGAAIQGGVLSG----HVKDLVLLDVTPLSLGIETLGGVFTRLINRN 458

Query: 368 STIPTK 385
           +TIPT+
Sbjct: 459 TTIPTR 464


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 57.6 bits (133), Expect = 8e-10
 Identities = 24/69 (34%), Positives = 46/69 (66%)
 Frame = +2

Query: 11  RARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 190
           R+  E L  D+  + +EP+ K+L+ A +  ++I+ I+L GG++RIP +Q  L D+ +  +
Sbjct: 333 RSVLESLCKDMEDAAVEPINKALKKANLTFSEINSIILFGGASRIPFIQSTLADYVSSDK 392

Query: 191 LNKSINPDE 217
           ++K++N DE
Sbjct: 393 ISKNVNADE 401


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 53.6 bits (123), Expect = 1e-08
 Identities = 27/69 (39%), Positives = 44/69 (63%)
 Frame = +2

Query: 11  RARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 190
           R+ FEEL   L      P+EK+L  A + K  ++ I +VGG TR+P V++++ ++F GK 
Sbjct: 305 RSDFEELIKPLLERLTPPIEKALELAGIKKEDLYSIEMVGGCTRVPIVKEVIANYF-GKG 363

Query: 191 LNKSINPDE 217
           L+ ++N DE
Sbjct: 364 LSFTLNQDE 372


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 32.3 bits (70), Expect = 0.033
 Identities = 14/64 (21%), Positives = 33/64 (51%)
 Frame = +2

Query: 11  RARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 190
           R R++   +       + V +++  A M+   I +++L GG++  PK+  L++  F  + 
Sbjct: 323 RLRYDLAASATLNRMADLVTEAVEKANMEPFDISEVILAGGASNTPKLTSLMESIFPEQT 382

Query: 191 LNKS 202
           + +S
Sbjct: 383 IIRS 386


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +3

Query: 48  DLQWSPSKSPSAMRRWTRPRFTTSYSWAG 134
           D+ W P KS     +   P F   + W G
Sbjct: 141 DIHWKPGKSLFRKNKKLPPNFFDYFQWTG 169


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 127  HEYDVVNLGLVHLRIAEGLFDGLHCRSEQISVQL 26
            HEY+V+   L      E LF G++ R E + ++L
Sbjct: 931  HEYNVIKGLLEEYYNVEKLFSGINKREEDVILRL 964


>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 458

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 334 GRCYDYAHQAQQHHPHE 384
           G+ YDY H  ++H  HE
Sbjct: 223 GQLYDYMHLRKEHCTHE 239


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 381 VGMVLLRLMSVVITPPAVSIPSDN 310
           V  VL  L SV  TPP + IP+ N
Sbjct: 364 VPTVLSGLPSVAYTPPVMHIPTTN 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,557,432
Number of Sequences: 5004
Number of extensions: 25246
Number of successful extensions: 100
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)