Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A06
         (301 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   3.3  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    20   5.7  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   7.6  

>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 78  YVNDASDALCYERFHVQTAPKP 13
           Y N+    LCY   H++  P P
Sbjct: 94  YNNNNYKQLCYNINHIEQIPVP 115


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 105 ENNNKDPKAKELKSREVKFNDYHLVDYLSGEFLEEQYRGQRDLAGKASTLRKL-LALH 275
           +  +K P++++  +       + L D L        +RG + +   A+ L+K+ L +H
Sbjct: 84  KTKSKSPESRDRSNTSNTSKTFILSDKLESSDDTSLFRGPKGIQINATELQKIKLEIH 141


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 10/39 (25%), Positives = 15/39 (38%)
 Frame = +1

Query: 73  DVCERDPXTQGKTTTKIRRPRNLNPGRSNSTTTILWTIY 189
           DV ERD        T  + P+N N         ++  +Y
Sbjct: 126 DVTERDNHLVNAFKTLTQEPKNTNKFLEKGPVALINELY 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.128    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,102
Number of Sequences: 438
Number of extensions: 1598
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)