Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A04
         (153 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    24   2.4  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    23   5.5  
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    23   7.2  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    22   9.5  

>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 57  IINNNNNSVRGSLYVYVYPVVYKGNM 134
           +  +++N  +G L V ++PV+  GN+
Sbjct: 90  LFRDDSNGAKGGLKVGIHPVLLDGNI 115


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 30  HFDYCLYYFIINNNNNSVRGSLYVYV 107
           H +  + YF +  NNN ++G    YV
Sbjct: 110 HIEAAVRYFTLAINNNFIKGRRSQYV 135


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 51  YFIINNNNNSVRGSLYVYVYPVVYKG 128
           Y  ++N N      L+  VY +VY+G
Sbjct: 338 YEFLDNQNKVSEFPLFTAVYRIVYEG 363


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 632

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 30 HFDYCLYYFIIN 65
          HF + +YYFII+
Sbjct: 7  HFTFIVYYFIIS 18


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 462,602
Number of Sequences: 5004
Number of extensions: 4599
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 31
effective length of database: 2,207,354
effective search space used: 41939726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)