Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A04
         (153 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-11|CAE17704.1|  100|Caenorhabditis elegans Hypothetical p...    30   0.26 
Z81030-17|CAB02706.2|   72|Caenorhabditis elegans Hypothetical p...    29   0.59 
Z81030-14|CAJ43441.1|   75|Caenorhabditis elegans Hypothetical p...    27   1.8  
Z81030-3|CAB02707.1|  138|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical ...    26   4.2  
Z81030-4|CAB02708.1|   89|Caenorhabditis elegans Hypothetical pr...    25   7.3  

>Z81030-11|CAE17704.1|  100|Caenorhabditis elegans Hypothetical
           protein C01G10.15 protein.
          Length = 100

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 39  YCLYYFIINNNNNSVRGSLYVY 104
           Y  YY+  NNNNN+  G  Y Y
Sbjct: 39  YTTYYYYPNNNNNNNNGQTYYY 60



 Score = 24.6 bits (51), Expect = 9.6
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 3   TRVVLLCS*HFDYCLYYFIINN-NNNSVRGSLYVYVYP 113
           T +VL  + +  Y  YY+  N  NNN+  G    Y YP
Sbjct: 9   TLLVLFSTANAYYLYYYYPNNGYNNNNNNGYTTYYYYP 46


>Z81030-17|CAB02706.2|   72|Caenorhabditis elegans Hypothetical
           protein C01G10.4 protein.
          Length = 72

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 9   VVLLCS*HFDYCLYYFIINNNNNSVRGSLYVYVYP 113
           +VLL + +  Y  YY+  NNN N+  G    Y YP
Sbjct: 11  LVLLSTANAYYTYYYYPNNNNYNNNNGYTTYYYYP 45


>Z81030-14|CAJ43441.1|   75|Caenorhabditis elegans Hypothetical
           protein C01G10.17 protein.
          Length = 75

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 39  YCLYYFIINNNNNSVRGSLYVYVYP 113
           Y  YY+  NNN N+  G    Y YP
Sbjct: 20  YYTYYYYPNNNYNNNNGYTTYYYYP 44


>Z81030-3|CAB02707.1|  138|Caenorhabditis elegans Hypothetical
           protein C01G10.5 protein.
          Length = 138

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +3

Query: 3   TRVVLLCS*HFDYCLYYFIINNNN--NSVRGSLYVYVYP 113
           T +VLL +    Y  YY+  NNNN  N   G    Y YP
Sbjct: 9   TLLVLLSTTSAYYTYYYYPNNNNNGYNYNNGYTTYYYYP 47


>AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical
           protein Y105C5B.1 protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 18  LCS*HFDYCLYYFIINNNNNSVRGSLYVYVYPVVYKGNMFV*KCI 152
           LC    D CL+  I+ N  N   G +++ +  V      F+  CI
Sbjct: 80  LCVIFDDICLFTSILGNEKNEASGFIFLIMMLVESSLGSFLLSCI 124


>Z81030-4|CAB02708.1|   89|Caenorhabditis elegans Hypothetical
          protein C01G10.6 protein.
          Length = 89

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 39 YCLYYFIINNNNNSVRGSLY 98
          Y  YY+  NNNNN+ + + Y
Sbjct: 33 YQTYYYYPNNNNNNGQNTYY 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,478
Number of Sequences: 27780
Number of extensions: 27789
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 12,740,198
effective HSP length: 31
effective length of database: 11,879,018
effective search space used: 225701342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)