Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_A03
(346 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0774 + 20478203-20479393 29 1.3
12_01_0450 - 3552701-3552865,3552971-3553195,3553306-3553473,355... 27 3.0
08_01_0382 - 3402015-3403604 27 3.0
10_06_0169 + 11420115-11420163,11420922-11421041,11421938-114220... 27 5.2
09_02_0229 - 6062825-6064899,6064943-6065432,6065479-6065956,606... 27 5.2
06_02_0053 - 10974209-10974229,10974562-10974621,10974708-109747... 27 5.2
06_02_0052 - 10964659-10964919,10964938-10965006,10965069-109651... 27 5.2
03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559 26 6.9
12_02_0496 + 19704429-19704613,19705874-19706736,19706764-197069... 26 9.1
06_03_0029 - 15673494-15673871,15674193-15674375,15674425-156744... 26 9.1
05_01_0190 + 1366791-1366817,1367536-1367616,1367858-1367900,136... 26 9.1
04_03_0839 + 20220909-20222471 26 9.1
02_02_0558 + 11477433-11477525,11477632-11477973,11481854-114823... 26 9.1
01_02_0091 - 11023912-11024017,11024112-11024185,11024478-110248... 26 9.1
>10_08_0774 + 20478203-20479393
Length = 396
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 260 IQTEC*LHWRRNAR*DCPQNATN*IDSKKPARLGSAVCNS 141
+ T+C H RR + D P TN + +P G+AVC S
Sbjct: 75 VWTQCAQHCRRCFKQDLPLFDTNASSTFRPEPCGAAVCES 114
>12_01_0450 -
3552701-3552865,3552971-3553195,3553306-3553473,
3554514-3554629,3554735-3554887,3554978-3555121,
3556667-3557276
Length = 526
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 158 NRDGQVFSSQFSLSHFVGNLSGRSFASVTST 250
N DGQ+ S+F+ GN G + VTST
Sbjct: 471 NNDGQIDYSEFAAMMRKGNAGGANAGGVTST 501
>08_01_0382 - 3402015-3403604
Length = 529
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 151 TAEPRRAGFFESIQFVAFCGQSQRA 225
T P RAG SIQ+ + GQS +A
Sbjct: 410 TPFPHRAGILYSIQYTVYWGQSDQA 434
>10_06_0169 +
11420115-11420163,11420922-11421041,11421938-11422053,
11422125-11422213,11422413-11422455,11423296-11423440,
11423581-11423688,11423767-11424086,11424255-11424671,
11424776-11425470,11425564-11426107,11426338-11426682,
11426799-11426909
Length = 1033
Score = 26.6 bits (56), Expect = 5.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 101 GNSHNNSVQYGNQKNCTRPNRDGQVFSSQFSLSHFVGNLSGR 226
G +++ Q Q+N P D +FSS+ S S +GN G+
Sbjct: 189 GTGYHSFTQMQQQQNGIGPVTDASMFSSRVSASS-IGNYQGQ 229
>09_02_0229 - 6062825-6064899,6064943-6065432,6065479-6065956,
6066333-6066382,6068917-6069172,6069358-6069503
Length = 1164
Score = 26.6 bits (56), Expect = 5.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = +1
Query: 139 EELHTAEPRRAGFF-----ESIQFVAFCGQSQRAFLRQCN*HS--VCIQRITALVSSF*T 297
EE++T E G F E +Q + FCGQS +L + + CI+ I + SF T
Sbjct: 862 EEINTIEAIFEGLFPPPSLEKLQIINFCGQSLPGWLISSSLETNLPCIEYIHLIGCSFCT 921
Query: 298 KM 303
++
Sbjct: 922 QL 923
>06_02_0053 -
10974209-10974229,10974562-10974621,10974708-10974750,
10975818-10975903,10976405-10976474,10976604-10977265
Length = 313
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 207 WAISAGVPSPV*LALSLYTAHHGLGLEFLDED 302
WA+ G S + A++L A HGL L + D
Sbjct: 60 WAVVTGPTSGIGRAMALELARHGLNLVLVGRD 91
>06_02_0052 -
10964659-10964919,10964938-10965006,10965069-10965138,
10965861-10966420
Length = 319
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 207 WAISAGVPSPV*LALSLYTAHHGLGLEFLDED 302
WA+ G S + A++L A HGL L + D
Sbjct: 59 WAVVTGPTSGIGRAMALELARHGLNLVLVGRD 90
>03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559
Length = 789
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 86 QTILMGNSHNNSVQYGNQKNCTRPNRDGQVFSSQFSLSHFVGNLSG 223
++ILM N + + + R + D V SS F + F GN+ G
Sbjct: 40 ESILMANVEEAVAAFPGRVDSLRQSYDRLVASSPFLIPFFWGNMEG 85
>12_02_0496 +
19704429-19704613,19705874-19706736,19706764-19706951,
19707190-19708200
Length = 748
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -1
Query: 223 PAEIAHKMRQTELTRKNLPVSVRPCAILLVSVLDTVIMRIAH*NSLLM 80
P + HK R T + R P+ R C I +V +R+ L+M
Sbjct: 401 PVLLKHKQRSTRVIRPFFPLIFRWCRINWQTVWSMPYIRVIEVEGLMM 448
>06_03_0029 -
15673494-15673871,15674193-15674375,15674425-15674478,
15674592-15674756,15676478-15676720,15676810-15676896,
15676995-15677225
Length = 446
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 110 HNNSVQYGNQKNCTRPNRDGQVFSSQFSLSHFVG 211
H N VQ+G + TRP+ G ++Q HF G
Sbjct: 352 HGNMVQFGGEVVNTRPS--GSHTATQMGSGHFPG 383
>05_01_0190 +
1366791-1366817,1367536-1367616,1367858-1367900,
1368104-1368182,1368291-1368450,1368565-1368692,
1369134-1369202,1369796-1369883,1370516-1370591,
1370767-1370840,1372635-1372742,1373783-1373944,
1374179-1374283,1374447-1374527,1374603-1375803,
1376654-1376750,1378086-1378160,1378461-1378623
Length = 938
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 185 DSKKPARLGSAVCNSSGFR 129
D KKP+ +G+ + N+SGFR
Sbjct: 515 DDKKPSVVGNRMQNNSGFR 533
>04_03_0839 + 20220909-20222471
Length = 520
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 294 LETRDQGRDALYTD*VLVTLAKE 226
L+ R +GRDA+ TD LVTL E
Sbjct: 292 LDLRVEGRDAVPTDEELVTLCAE 314
>02_02_0558 +
11477433-11477525,11477632-11477973,11481854-11482381,
11482459-11482956
Length = 486
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 268 CAVYRLSASYTGEGTPAEIAHKMRQTEL 185
CAVY + TG+ TP +A R T L
Sbjct: 456 CAVYSPESRGTGDWTPPRLAVSSRATRL 483
>01_02_0091 -
11023912-11024017,11024112-11024185,11024478-11024834,
11024938-11025166,11025468-11025559,11026099-11026326,
11027108-11027356,11027429-11027471,11027589-11027836,
11027922-11028035,11028122-11028322,11028417-11028593,
11028725-11028853,11029210-11029287,11029369-11029464,
11029563-11029634,11031549-11031677,11032105-11032220,
11033048-11033204,11033343-11033426,11033513-11033574,
11034901-11035067,11035162-11035226,11035315-11035371,
11035547-11035633,11036638-11036703,11036810-11036908
Length = 1193
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 22 HSNLQVKKFCNQNVTASLITLA 87
H + K+ CNQN+ SL+ LA
Sbjct: 494 HGKVLCKEQCNQNILLSLVRLA 515
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,235,271
Number of Sequences: 37544
Number of extensions: 147656
Number of successful extensions: 308
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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