Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A03
         (346 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024845-2|AAF60851.1|  324|Caenorhabditis elegans Hypothetical ...    28   2.1  
AL021175-1|CAA15965.1|  307|Caenorhabditis elegans Hypothetical ...    26   6.3  
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr...    26   8.3  
Z14092-11|CAI46627.1|  817|Caenorhabditis elegans Hypothetical p...    26   8.3  
Z14092-5|CAD45600.1|  816|Caenorhabditis elegans Hypothetical pr...    26   8.3  
Z14092-4|CAD45599.1|  820|Caenorhabditis elegans Hypothetical pr...    26   8.3  
Z14092-3|CAA78473.3|  754|Caenorhabditis elegans Hypothetical pr...    26   8.3  
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ...    26   8.3  
AC024800-5|AAF60724.1|  966|Caenorhabditis elegans Hypothetical ...    26   8.3  

>AC024845-2|AAF60851.1|  324|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.4 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 205 KMRQTELTRKNLPVSVRPCAILLVSVLDTV 116
           ++ +T +TR+N P  V P  +L+ S +  +
Sbjct: 126 RLSETSITRRNFPRKVNPALLLIPSAISVI 155


>AL021175-1|CAA15965.1|  307|Caenorhabditis elegans Hypothetical
           protein Y6E2A.1 protein.
          Length = 307

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 183 LEKTCPSRFGRVQFFWFPYWTLLL 112
           L  TCPS+  R    + P WT ++
Sbjct: 73  LSVTCPSKLSRFSLKFVPIWTFIV 96


>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical
           protein W05B2.4 protein.
          Length = 2265

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = +2

Query: 158 NRDGQVFSSQFSLSHFVGNLSGRSFASVTSTQSVYXXXXXXXXXXXXXWNDST*RN 325
           NR G +F     +   VGN+  + F  VT T+ +              W D   RN
Sbjct: 200 NRKGLIFEVNELIDPEVGNIPIKKFREVTLTKVLEFSQEINMKLLKKNWRDEKKRN 255


>Z14092-11|CAI46627.1|  817|Caenorhabditis elegans Hypothetical
           protein R107.4d protein.
          Length = 817

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 144 IAHGRTETGRFFRVNSVCRILWAISAGV 227
           +  GRTE+GR   V + C+ L   + G+
Sbjct: 35  VYRGRTESGRLVAVKTACKKLEVAAIGI 62


>Z14092-5|CAD45600.1|  816|Caenorhabditis elegans Hypothetical
           protein R107.4c protein.
          Length = 816

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 144 IAHGRTETGRFFRVNSVCRILWAISAGV 227
           +  GRTE+GR   V + C+ L   + G+
Sbjct: 35  VYRGRTESGRLVAVKTACKKLEVAAIGI 62


>Z14092-4|CAD45599.1|  820|Caenorhabditis elegans Hypothetical
           protein R107.4b protein.
          Length = 820

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 144 IAHGRTETGRFFRVNSVCRILWAISAGV 227
           +  GRTE+GR   V + C+ L   + G+
Sbjct: 35  VYRGRTESGRLVAVKTACKKLEVAAIGI 62


>Z14092-3|CAA78473.3|  754|Caenorhabditis elegans Hypothetical
           protein R107.4a protein.
          Length = 754

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 144 IAHGRTETGRFFRVNSVCRILWAISAGV 227
           +  GRTE+GR   V + C+ L   + G+
Sbjct: 35  VYRGRTESGRLVAVKTACKKLEVAAIGI 62


>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
            protein Y113G7B.12 protein.
          Length = 1042

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 147  QFFWFPYWTLLLCELPIKIVC 85
            QF +  +   LLCE+PI I C
Sbjct: 959  QFMFLVFINSLLCEIPINISC 979


>AC024800-5|AAF60724.1|  966|Caenorhabditis elegans Hypothetical
           protein Y49F6A.1 protein.
          Length = 966

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 125 QYGNQKNCTRPNRDGQV 175
           Q G+Q +C RPN++G V
Sbjct: 19  QSGSQGSCVRPNQEGNV 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,399,371
Number of Sequences: 27780
Number of extensions: 138022
Number of successful extensions: 304
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)