Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A02
         (217 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    70   5e-14
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    69   6e-14
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    24   3.1  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    23   4.1  
SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   5.5  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    23   5.5  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    23   5.5  
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|...    23   7.2  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    22   9.6  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 69.7 bits (163), Expect = 5e-14
 Identities = 31/60 (51%), Positives = 40/60 (66%)
 Frame = +2

Query: 26  RNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLYGSWKTPSKEKKNFNLPQ 205
           RNIPG+E+           APGGHLGRF+IWTKSAF  LD ++GS    ++ KKN+ LP+
Sbjct: 222 RNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPE 281


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 69.3 bits (162), Expect = 6e-14
 Identities = 31/60 (51%), Positives = 40/60 (66%)
 Frame = +2

Query: 26  RNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLYGSWKTPSKEKKNFNLPQ 205
           RNIPG+E+           APGGHLGRF+IWTKSAF  LD ++GS    ++ KKN+ LP+
Sbjct: 222 RNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPE 281


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -1

Query: 151 QRVKPIESGLGPDDEP-AEMAAGCQ---LQEVQLVHVEHL 44
           Q  +PI   +GP+ EP AE  +G +   LQE     VE L
Sbjct: 173 QHFRPIGDAVGPESEPEAEPKSGIKEHILQETGDATVEEL 212


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 183 FSFDGVFHEPYSGSSLSKADLVQMMNLPRWPPGASFR 73
           F+ D +      GSSL  + +V+ M  PR P G   R
Sbjct: 197 FNVDNIRVVKIMGSSLYNSQVVKGMVFPREPEGTVTR 233


>SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -1

Query: 136 IESGLGPDDEPAEMAAGCQLQEVQLVHVEHLDARDVPDMH 17
           IESG       AE  A C L E+    + H      PD+H
Sbjct: 68  IESGKWFVQLTAEGCANCTLGELLFNDLSHAFHEKYPDVH 107


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 28  EHPWHRDAQREQAEPPEAGTRRPSRQVHHLD 120
           + PW+  A R++   PE    RP  +   LD
Sbjct: 646 DRPWNDPAPRKKKNAPEVEDTRPLLRAIILD 676


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 216 AIFGWGRLKFFFSFDGVFHEPYS 148
           ++F  G+++ F SF G F+E Y+
Sbjct: 649 SLFIDGKIESFISFQGDFNEVYT 671


>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 303

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
 Frame = +2

Query: 95  HLGRFIIWTKSAFDRLDP--------LYGSWKTPSKEKKNFNLPQPKMA 217
           ++ R + W+KSA  + D         ++  WK P+  +K+F L   K A
Sbjct: 102 YVKRLLEWSKSAGPQGDKDVHFAVATMFVKWKEPASAEKHFVLGNEKSA 150


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 213 IFGWGRLKFFFSFDGVFHEPYSGSSLSKADLV 118
           +  W  + +FF FD    +PY+ + +S + +V
Sbjct: 70  VLSW--IAYFFGFDKAMLDPYNLNYVSPSTVV 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 772,756
Number of Sequences: 5004
Number of extensions: 12435
Number of successful extensions: 44
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)