Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_A02
(217 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 81 1e-16
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 80 2e-16
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 29 0.39
06_01_0883 + 6768998-6769381,6769518-6769616,6769664-6769726,677... 28 1.2
10_08_0132 + 15087274-15087797,15089544-15089732,15090048-150901... 27 1.6
02_03_0161 + 15828887-15828985,15829066-15829686,15829759-158299... 27 2.1
07_03_1249 - 25172651-25172893,25173001-25173355,25173435-251735... 27 2.7
12_02_0056 + 12955832-12956410,12957398-12957499 26 3.6
02_01_0506 - 3677786-3677972,3678731-3679884 26 4.8
09_06_0010 - 20193577-20193921,20194014-20194160,20194239-201944... 25 6.3
08_01_1068 + 10899965-10900129,10900408-10900562,10900688-109009... 25 6.3
05_03_0184 + 9339939-9340896,9341003-9341083,9341166-9341383,934... 25 8.3
04_01_0469 - 6056147-6056320,6058065-6058179,6059029-6059033 25 8.3
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 81.0 bits (191), Expect = 1e-16
Identities = 33/64 (51%), Positives = 47/64 (73%)
Frame = +2
Query: 26 RNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLYGSWKTPSKEKKNFNLPQ 205
RN+PG+++ APGGHLGRF+IWT+SAF +L+ +YG+++ PS +KK F LP+
Sbjct: 227 RNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPR 286
Query: 206 PKMA 217
PKMA
Sbjct: 287 PKMA 290
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 80.2 bits (189), Expect = 2e-16
Identities = 33/64 (51%), Positives = 45/64 (70%)
Frame = +2
Query: 26 RNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLYGSWKTPSKEKKNFNLPQ 205
RN+PG+++ APGGHLGRF+IWT+ AF +LD +YG + TP+ +KK F LP+
Sbjct: 226 RNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPR 285
Query: 206 PKMA 217
PKMA
Sbjct: 286 PKMA 289
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.5 bits (63), Expect = 0.39
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 83 APG--GHLGRFIIWTKSAFDRLDPLYGSWKTPSKEKKNFNLPQ 205
APG G GR+++ SA + LDP + SW S+E K F++ +
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEE 711
>06_01_0883 +
6768998-6769381,6769518-6769616,6769664-6769726,
6770883-6770931,6771338-6771405,6771463-6771715,
6772244-6772380,6772708-6772821,6773059-6773258,
6773367-6773561,6773650-6773812
Length = 574
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -1
Query: 148 RVKPIESGLGPDDEPAEMAAGCQLQEVQLVHVEHLDARDVPDMHESASC 2
R P+ +G G DD+ + AG + LV + + R+V + A+C
Sbjct: 90 RATPLGAGAGADDDDDDEEAGRVAYPMVLVQIPMYNEREVYKLSIGAAC 138
>10_08_0132 +
15087274-15087797,15089544-15089732,15090048-15090186,
15090454-15090594,15091420-15091569,15091908-15092011,
15092258-15092432,15092714-15092823,15092906-15093073,
15093180-15093345,15093771-15094049,15094445-15094543,
15094619-15094676,15095145-15095336,15095693-15095724,
15096023-15096117,15096321-15096426
Length = 908
Score = 27.5 bits (58), Expect = 1.6
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = -1
Query: 166 LPRAVQRVKPIESGLGPDDE---PAEMAAGCQLQEVQLVHVEHLDARDVP 26
LP AV V+ S P D P E+ GC L +QL H++ +A VP
Sbjct: 613 LPVAVSSVQVKRSTDDPLDTKTLPCEVKTGCTLSPIQLKHIQ-ANAGHVP 661
>02_03_0161 +
15828887-15828985,15829066-15829686,15829759-15829908,
15829994-15830389,15830455-15830487,15830553-15830693,
15830793-15830924,15830999-15831082,15831159-15831461,
15831543-15831734,15831805-15831942,15832019-15832143,
15832223-15832319
Length = 836
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -2
Query: 162 HEPYSGSSLSKADLVQMMNLPRWPPGASFRRFSLFTLS-ISMPGMFRICTSQ 10
++ + G ++S +L + +N + P RRF LFT+ I P I +SQ
Sbjct: 143 YKQHKGKNISLHELARQINSAKHPDEHFLRRFVLFTIGYILCPTTKPIVSSQ 194
>07_03_1249 -
25172651-25172893,25173001-25173355,25173435-25173593,
25173809-25174269,25175137-25175322,25175429-25175800
Length = 591
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 147 GSSLSKADLVQMMNLPRWPPGASFRRFSLFTLSISMPGMFRICTSQPRA 1
G + + A L Q++ LPRW P +S LS + P R+ + RA
Sbjct: 33 GHAAAAASLEQLLLLPRWSPPSS-------PLSFARPAAERVAARRARA 74
>12_02_0056 + 12955832-12956410,12957398-12957499
Length = 226
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 46 DAQREQAEPPEAGTRRPSRQVHHLDQ 123
DA Q PPE +RRP R+ LD+
Sbjct: 175 DADLYQVPPPEFVSRRPRRKGSQLDE 200
>02_01_0506 - 3677786-3677972,3678731-3679884
Length = 446
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 168 VFHEPYSGSSLSKADLVQMMNLPRWPPGASFRRFS 64
+F PY G AD ++P + PGA+ RRF+
Sbjct: 100 LFTAPYGGDHGVGADAATTASIPSFSPGAA-RRFA 133
>09_06_0010 -
20193577-20193921,20194014-20194160,20194239-20194495,
20194619-20194826
Length = 318
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 177 FDGVFHEPYSGSSLSKADLVQMMNLP 100
F+GV+HE Y S S +L + ++ P
Sbjct: 54 FNGVYHEIYINSQASFGELKKQLSAP 79
>08_01_1068 +
10899965-10900129,10900408-10900562,10900688-10900996,
10901870-10901939,10902504-10902802,10904305-10904724,
10906063-10906324
Length = 559
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/37 (29%), Positives = 13/37 (35%)
Frame = +1
Query: 1 GTRLTRAYPEHPWHRDAQREQAEPPEAGTRRPSRQVH 111
G R YP +HRD + PP G H
Sbjct: 333 GMRFLAPYPHVRYHRDQLGAEGAPPPVGPEETFNHQH 369
>05_03_0184 +
9339939-9340896,9341003-9341083,9341166-9341383,
9341796-9342019,9342409-9343096
Length = 722
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 7 RLTRAYPEHPWHRDAQREQAEPPEAGTRRPSRQV 108
R R +PE P A +++A+ + G +PS V
Sbjct: 204 RSDRMHPELPGDNAAPKQEAQAKKGGMSKPSGSV 237
>04_01_0469 - 6056147-6056320,6058065-6058179,6059029-6059033
Length = 97
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 207 GWGRLKFFFSFDGVF 163
GWG +FFF +G+F
Sbjct: 4 GWGWREFFFGAEGIF 18
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,554,200
Number of Sequences: 37544
Number of extensions: 97803
Number of successful extensions: 378
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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