Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_A02
(217 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450 monoo... 25 0.077
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 25 0.077
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 1.3
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 1.3
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 19 5.1
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 19 5.1
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 19 5.1
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 19 6.7
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 19 6.7
L10430-1|AAA27731.1| 150|Apis mellifera transposase protein. 19 8.8
AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase pr... 19 8.8
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 19 8.8
>DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 517
Score = 25.4 bits (53), Expect = 0.077
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 95 HLGRFIIWTKSAFDRLDPLYGSWKTPSKEKKNFNLP 202
H + WT ++ + P G +KT SK F+LP
Sbjct: 25 HRPAWWFWTATSHEASAPAEGKFKTVSKVPGPFSLP 60
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 25.4 bits (53), Expect = 0.077
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -1
Query: 184 LLLRWCLP---RAVQRVKPIESGLGPDDEPAEMAA 89
LL +WCLP + V+P + P D+P +++A
Sbjct: 483 LLPQWCLPPREAPLVGVQPHQDSATPADQPLDLSA 517
Score = 19.8 bits (39), Expect = 3.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 172 IEGEEELQSAPAEDG 216
++ EEELQ AP+ G
Sbjct: 358 VKKEEELQEAPSCGG 372
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 1.3
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = +1
Query: 1 GTRLTRAYPEHPWHRDAQREQAEPPEAGTRRPSRQ 105
G T YP HP ++ E P +R S++
Sbjct: 383 GKEKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKE 417
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 1.3
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = +1
Query: 1 GTRLTRAYPEHPWHRDAQREQAEPPEAGTRRPSRQ 105
G T YP HP ++ E P +R S++
Sbjct: 383 GKEKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKE 417
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 19.4 bits (38), Expect = 5.1
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = +2
Query: 89 GGHLGRFIIWTKSAFDRLDP 148
GG R +IWT + + +P
Sbjct: 89 GGQFVRDLIWTPTVYVSNEP 108
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 19.4 bits (38), Expect = 5.1
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -2
Query: 81 SFRRFSLFTLSISMPGMFRICTSQP 7
SFR F T MF + T+QP
Sbjct: 269 SFRDFRDRTTEQQHKAMFLVVTAQP 293
Score = 18.6 bits (36), Expect = 8.8
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -1
Query: 142 KPIESGLGPDDEPAE 98
K ES PD +P E
Sbjct: 965 KSSESSCNPDQKPTE 979
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 19.4 bits (38), Expect = 5.1
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -2
Query: 81 SFRRFSLFTLSISMPGMFRICTSQP 7
SFR F T MF + T+QP
Sbjct: 264 SFRDFRDRTTEQQHKAMFLVVTAQP 288
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 19.0 bits (37), Expect = 6.7
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +2
Query: 167 TPSKEKKNFNLPQP 208
TP KE+K QP
Sbjct: 790 TPKKERKTATTTQP 803
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 19.0 bits (37), Expect = 6.7
Identities = 7/16 (43%), Positives = 14/16 (87%)
Frame = -2
Query: 153 YSGSSLSKADLVQMMN 106
+SGSSL+K+ L++ ++
Sbjct: 137 HSGSSLTKSRLMRCLH 152
>L10430-1|AAA27731.1| 150|Apis mellifera transposase protein.
Length = 150
Score = 18.6 bits (36), Expect = 8.8
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = -3
Query: 134 RKRTWSR 114
RKR+WSR
Sbjct: 43 RKRSWSR 49
>AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase
protein.
Length = 342
Score = 18.6 bits (36), Expect = 8.8
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = -3
Query: 134 RKRTWSR 114
RKR+WSR
Sbjct: 164 RKRSWSR 170
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 18.6 bits (36), Expect = 8.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 136 IESGLGPDDEPAEMAA 89
IESG D+PA +A
Sbjct: 582 IESGTEKPDKPASSSA 597
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,178
Number of Sequences: 438
Number of extensions: 854
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used: 3154875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
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