Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_A01
(271 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 91 2e-20
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 89 1e-19
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 41 3e-05
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 27 0.35
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 0.80
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 1.1
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 25 1.4
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 24 4.3
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 24 4.3
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 23 5.7
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 23 5.7
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 23 5.7
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 23 5.7
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 23 7.5
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi... 23 7.5
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S... 23 7.5
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 23 9.9
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 23 9.9
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 23 9.9
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 23 9.9
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 23 9.9
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 91.5 bits (217), Expect = 2e-20
Identities = 42/60 (70%), Positives = 48/60 (80%)
Frame = +3
Query: 90 FDGALNVDLTEFQTNLVPYPXVSISQLVTYAPVISAEKAYHEQLSVAEITNACFEPANQM 269
F+G+LNVDL EFQTNLVPYP + LVTYAP++SA KA+HE SV EITN CFEP NQM
Sbjct: 244 FEGSLNVDLAEFQTNLVPYPRIHFP-LVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQM 302
Score = 51.6 bits (118), Expect = 2e-08
Identities = 24/29 (82%), Positives = 26/29 (89%)
Frame = +1
Query: 4 RGLDIERPTYTNLNRLIGQIVSSITASLR 90
R LDIERP+Y NLNRLI Q+VSSITASLR
Sbjct: 215 RNLDIERPSYENLNRLIAQVVSSITASLR 243
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 88.6 bits (210), Expect = 1e-19
Identities = 41/60 (68%), Positives = 47/60 (78%)
Frame = +3
Query: 90 FDGALNVDLTEFQTNLVPYPXVSISQLVTYAPVISAEKAYHEQLSVAEITNACFEPANQM 269
F G+LNVDL EFQTNLVPYP + LVTY+P++SA KA+HE SV EITN CFEP NQM
Sbjct: 248 FAGSLNVDLNEFQTNLVPYPRIHFP-LVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQM 306
Score = 53.2 bits (122), Expect = 6e-09
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = +1
Query: 4 RGLDIERPTYTNLNRLIGQIVSSITASLR 90
R LDIERPTY NLNRLI Q+VSSITASLR
Sbjct: 219 RNLDIERPTYENLNRLIAQVVSSITASLR 247
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 40.7 bits (91), Expect = 3e-05
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +3
Query: 90 FDGALNVDLTEFQTNLVPYPXVSISQLVTYAPVISAEKAYHEQLSVAEITNACFEPANQM 269
F G LN DL + N+VP+P + +V +AP+ + + + +SV E+T F+ N M
Sbjct: 242 FPGELNSDLRKLAVNMVPFPRLHFF-MVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMM 300
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 27.5 bits (58), Expect = 0.35
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = +2
Query: 53 SARSYHRLPPLCVRRRPQCRSNGVPDQ--LGALPTXIHFPTG-HVRSSHLCREGLPRAAL 223
S HR PP +R C S+G P +G+L + P+G H+ L E
Sbjct: 162 STAQNHRSPPASCKRLSSCESSGSPSSRVVGSLQGS-YCPSGTHLHEGSLLLEDSSARHS 220
Query: 224 CSGDHERLLR 253
HE L++
Sbjct: 221 SDSVHEYLVK 230
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.2 bits (55), Expect = 0.80
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -3
Query: 200 LGRDDWSVRDQLGNGYXWVGHQ 135
LG DW V LG W+G +
Sbjct: 658 LGNADWEVPQNLGEELSWIGQK 679
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.8 bits (54), Expect = 1.1
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +2
Query: 14 ILNARPTPTSIVLSARSYHRL 76
I NAR T V S RSYHRL
Sbjct: 1499 IKNARAKLTKAVKSLRSYHRL 1519
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 25.4 bits (53), Expect = 1.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 96 GALNVDLTEFQTNLVPYPXVSISQLVTYAPVI 191
G + + F++NLVPYP I+ + P I
Sbjct: 517 GRAPIAILSFKSNLVPYPENLIASIERLIPFI 548
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 23.8 bits (49), Expect = 4.3
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 269 HLVGGLEASVRDLRYRELLVVSLLGRDDWSVRDQLGNGY 153
H++ + V LR R +++ DWS + QL N Y
Sbjct: 469 HVMPEFTSPVGYLRSRACEMINRFSEIDWSDKSQLLNAY 507
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 23.8 bits (49), Expect = 4.3
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 156 SISQLVTYAPVISAEKAYHEQLSVAEITNACFEPA 260
++SQ P + + YH L V I N + PA
Sbjct: 1009 AVSQYFLVTPKLLPDLTYHRNLKVLCICNGAWLPA 1043
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 23.4 bits (48), Expect = 5.7
Identities = 7/23 (30%), Positives = 14/23 (60%)
Frame = -3
Query: 212 VVSLLGRDDWSVRDQLGNGYXWV 144
++S+ G++ ++ L GY WV
Sbjct: 183 IISIFGKESGTISQFLPEGYWWV 205
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 23.4 bits (48), Expect = 5.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 38 TSIVLSARSYHRLPPLCVRRRPQCRSNGVPDQLGALPTXIHFPT 169
T I S R H +P + + +P R N + + ALP H PT
Sbjct: 132 THIDDSLRDVH-MPEMKRKFKPPLRPNTMYQTISALPKPRHDPT 174
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 23.4 bits (48), Expect = 5.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 20 NARPTPTSIVLSARSYHRLPPLCVRRRP 103
N R +IV + S +R PP + +RP
Sbjct: 381 NVRTKAANIVRPSSSINRRPPSSINQRP 408
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 23.4 bits (48), Expect = 5.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 215 LVVSLLGRDDWSVRDQLGNGYXWVGHQVGLEL 120
L+V+ L WS + G VG Q+G EL
Sbjct: 69 LIVARLDDGTWSAPSAVMTGGMGVGAQIGSEL 100
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 23.0 bits (47), Expect = 7.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 10 LDIERPTYTNLNRLIGQIVSSITASLRSTAPSM 108
+D E+ T N L+ + VSS +S+ + PS+
Sbjct: 179 MDSEKRTRHRPNHLVDEFVSSDMSSVPQSMPSV 211
>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 23.0 bits (47), Expect = 7.5
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 146 PTXIHFPTGHVRSSHLCREGLPRAALCSGDHER 244
PT I PT +R + P+ + G+H+R
Sbjct: 247 PTIIATPTAGLRRRDSWAQAAPKRGMRLGEHKR 279
>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 2|||Manual
Length = 108
Score = 23.0 bits (47), Expect = 7.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 11 WILNARPTPTSIVLSARSYHRLPP 82
W +RP S V+ AR H LPP
Sbjct: 69 WGTVSRPHGNSGVVRARFTHNLPP 92
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 22.6 bits (46), Expect = 9.9
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 222 SVAEITNACFEPA 260
SV ++T ACFEP+
Sbjct: 800 SVTKVTCACFEPS 812
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 22.6 bits (46), Expect = 9.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 96 GALNVDLTEFQTNLVPYPXVS 158
G L++ L F NLVP P VS
Sbjct: 254 GGLSLALLIFFLNLVPKPTVS 274
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 22.6 bits (46), Expect = 9.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 96 GALNVDLTEFQTNLVPYPXVS 158
G L++ L F NLVP P VS
Sbjct: 254 GGLSLALLIFFLNLVPKPTVS 274
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 22.6 bits (46), Expect = 9.9
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -3
Query: 203 LLGRDDWSVRDQLGNGYXWVGHQVGLELR*IDIEGAVERREAVIDDTI 60
L G D + + G+ ++ Q E+ I + G VER + V+ DT+
Sbjct: 281 LSGTDYYDYEEDNRVGFTFIEAQ---EIDEIGVNGIVERIKQVVGDTL 325
>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 624
Score = 22.6 bits (46), Expect = 9.9
Identities = 11/44 (25%), Positives = 18/44 (40%)
Frame = +1
Query: 34 TNLNRLIGQIVSSITASLRSTAPSMSI*RSSRPTWCPTHXYPFP 165
T+L L G+ +S P+++ TW YP+P
Sbjct: 205 TSLTDLWGRALSRKLVDATQGGPNITFSSIRNQTWFQNADYPYP 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,109,901
Number of Sequences: 5004
Number of extensions: 19592
Number of successful extensions: 66
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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