Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A01
         (271 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   3.6  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    20   4.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   4.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   6.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     19   8.2  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 3.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 221 LCSGDHERLLR 253
           LCS D ERL+R
Sbjct: 22  LCSEDEERLVR 32


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.2 bits (40), Expect = 4.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 222 SVAEITNACFEPA 260
           SV   T ACFEP+
Sbjct: 164 SVTGKTTACFEPS 176


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 4.7
 Identities = 9/13 (69%), Positives = 9/13 (69%), Gaps = 1/13 (7%)
 Frame = +2

Query: 86  CVRR-RPQCRSNG 121
           C RR RP C SNG
Sbjct: 110 CPRRHRPVCASNG 122


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 6.2
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 116 NGVPDQLGALPTXIHFPTGHVRSSHLCREGL 208
           N   + L +LP  +   T  +R  HL   GL
Sbjct: 267 NASYNSLDSLPEGLFASTRDLREIHLAYNGL 297


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 143 LPTXIHFPTGHVRSSHLCREGLPRAALC 226
           LP   +FPT ++         + RAA C
Sbjct: 450 LPVLKNFPTRYIHEPWNAPLNVQRAAKC 477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,277
Number of Sequences: 438
Number of extensions: 1604
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5138079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)