Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_P24
(285 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 109 6e-26
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 37 6e-04
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 34 0.005
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 33 0.008
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 33 0.008
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 32 0.014
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 32 0.018
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 31 0.024
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 31 0.024
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 31 0.024
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 31 0.032
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 31 0.043
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 30 0.074
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 29 0.098
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|... 29 0.098
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 29 0.098
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 28 0.23
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 28 0.30
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 28 0.30
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 28 0.30
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 28 0.30
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 27 0.40
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 27 0.40
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 27 0.40
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 27 0.52
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 27 0.69
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 1.2
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 26 1.2
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 26 1.2
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 26 1.2
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 25 1.6
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 25 1.6
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 25 1.6
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 25 2.1
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 25 2.1
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 25 2.1
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 25 2.8
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo... 25 2.8
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 24 3.7
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 24 3.7
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch... 24 4.9
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2... 24 4.9
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c... 23 6.5
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 23 6.5
SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 23 6.5
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 23 8.5
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 23 8.5
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 23 8.5
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 109 bits (263), Expect = 6e-26
Identities = 47/80 (58%), Positives = 61/80 (76%)
Frame = +1
Query: 46 MSETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLY 225
M E L LR TL GH+GW+T ++T P+ PD++LS SRDK++I+W L RD+ NYG+ Q+RL
Sbjct: 1 MPEQLVLRATLEGHSGWVTSLSTAPENPDILLSGSRDKSIILWNLVRDDVNYGVAQRRLT 60
Query: 226 GHSHFISDVVLSSDGDYALS 285
GHSHF+SD LS D YALS
Sbjct: 61 GHSHFVSDCALSFDSHYALS 80
Score = 36.7 bits (81), Expect = 6e-04
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +1
Query: 82 GHNGWITQIATNPKYPDMI--LSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 255
GH+ W++ + +P PD + +S+ DK + VW L ET + L YGH+ ++S V
Sbjct: 146 GHSDWVSCVRFSPN-PDNLTFVSAGWDKAVKVWDL---ET-FSLRTSH-YGHTGYVSAVT 199
Query: 256 LSSDGDYALS 285
+S DG S
Sbjct: 200 ISPDGSLCAS 209
Score = 28.7 bits (61), Expect = 0.17
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +1
Query: 82 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 261
GH + ++ +P ++ S SRDKT+ +W + Y + GHS ++S V S
Sbjct: 103 GHTSDVLSVSISPDNRQVV-SGSRDKTIKIWNII-GNCKYTITDG---GHSDWVSCVRFS 157
Query: 262 SDGD 273
+ D
Sbjct: 158 PNPD 161
Score = 27.5 bits (58), Expect = 0.40
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +1
Query: 76 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 255
L GH+ +++ A + LS+S DKT+ +W L + E + + GH+ + V
Sbjct: 59 LTGHSHFVSDCALSFD-SHYALSASWDKTIRLWDLEKGECTH-----QFVGHTSDVLSVS 112
Query: 256 LSSDGDYALS 285
+S D +S
Sbjct: 113 ISPDNRQVVS 122
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 36.7 bits (81), Expect = 6e-04
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +1
Query: 76 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGL 207
L GH W+ + +P +MILSSS D ++IVW+ +TN G+
Sbjct: 264 LMGHEDWVMSVDWHPT-KEMILSSSADSSMIVWE---PDTNTGI 303
Score = 31.9 bits (69), Expect = 0.018
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = +1
Query: 76 LCGHNGWIT---QIATNPKYPD-MILSSSRDKTLIVWKLTRD 189
+ GH+G I ++ATN +Y ILS + DKTL +W+L +
Sbjct: 47 MAGHSGRINCVCELATNSEYRSPFILSGASDKTLRLWQLEEE 88
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 33.9 bits (74), Expect = 0.005
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +1
Query: 82 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKL--TRDE-----TNYGLPQKRLYGHSHF 240
GH + IA +P ++LS S DKT+ VW+L TR G+ + GH+ F
Sbjct: 482 GHKESVYSIAFSPD-SSILLSGSLDKTIKVWELQATRSVGLSAIKPEGICKATYTGHTDF 540
Query: 241 ISDVVLSSDGDYALS 285
+ V +S D + LS
Sbjct: 541 VLSVAVSPDSRWGLS 555
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 33.1 bits (72), Expect = 0.008
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = +1
Query: 61 KLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHF 240
KL +LCGH ++ + +YP ILS S D+T+ +W + + L GHSH+
Sbjct: 86 KLLFSLCGHMDYVRVCTFHHEYP-WILSCSDDQTIRIWN-WQSRNCIAI----LTGHSHY 139
Query: 241 ISDVVLSSDGDYALS 285
+ D +S
Sbjct: 140 VMCAAFHPSEDLIVS 154
Score = 29.1 bits (62), Expect = 0.13
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 73 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTR 186
T GH ++ +P + ++ILS+S DKT+ VW L R
Sbjct: 251 TCRGHFNNVSCCLFHP-HQELILSASEDKTIRVWDLNR 287
Score = 28.7 bits (61), Expect = 0.17
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 76 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLT 183
L GH+ ++ A +P D+I+S+S D+T+ VW ++
Sbjct: 133 LTGHSHYVMCAAFHPS-EDLIVSASLDQTVRVWDIS 167
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 33.1 bits (72), Expect = 0.008
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 73 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTR 186
TL GH +T+I+ +P ++ S+S D+ +VW L+R
Sbjct: 320 TLEGHEDIVTKISFSPHEEPILASTSADRRTLVWDLSR 357
Score = 29.5 bits (63), Expect = 0.098
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 85 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 261
H+G I +A NP ++ + S DKT+ +W D N L GH ++ + S
Sbjct: 280 HSGPIHSVAFNPHNDFILATCSTDKTIALW----DLRNLNQRLHTLEGHEDIVTKISFS 334
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 32.3 bits (70), Expect = 0.014
Identities = 25/78 (32%), Positives = 36/78 (46%)
Frame = +1
Query: 52 ETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGH 231
+T K TL GH + Q A + +++SSS+D TL VW + + + LP GH
Sbjct: 419 KTGKFLATLRGHVAAVYQCAWSTD-SRLLVSSSQDTTLKVWDVRSKKMKFDLP-----GH 472
Query: 232 SHFISDVVLSSDGDYALS 285
+ V S DG S
Sbjct: 473 EDQVFAVDWSPDGQRVAS 490
Score = 25.0 bits (52), Expect = 2.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 73 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVW 174
TL GH IT + + + I SSS DKT+ +W
Sbjct: 264 TLSGHTAPITCVRWGGQ--NWIYSSSYDKTIRIW 295
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 31.9 bits (69), Expect = 0.018
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 73 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGL 207
T GH+ ++ +A NPK + SS D T+ VW N+ L
Sbjct: 136 TFEGHSRYVMSLAINPKDTNTFASSCLDGTVKVWSFGSSVANFTL 180
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 31.5 bits (68), Expect = 0.024
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 73 TLCGHNGWITQIA-TNPKYPDMILSSSRDKTLIVWKLT 183
TL GH+G + Q+ +PK+ ++ S+S D +IVW+ T
Sbjct: 48 TLRGHSGPVWQLGWAHPKFGTILASASYDGHVIVWRET 85
Score = 29.1 bits (62), Expect = 0.13
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Frame = +1
Query: 31 WGFIKMSETLKLRGTLCGHNGWITQIATNPKY---PDMILSSSRDKTLIVW 174
W F L TL GH W +A P + S+S+DK + +W
Sbjct: 186 WAFDAGVNNWILEDTLAGHVDWTRDVAWAPSVGLTKTYLASASQDKNVFIW 236
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 31.5 bits (68), Expect = 0.024
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 52 ETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVW 174
E+ KL TL GH + +A NP P S+ D T+ +W
Sbjct: 458 ESGKLLATLSGHVKCVNYVAYNPVDPYQFASAGDDNTVRIW 498
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 31.5 bits (68), Expect = 0.024
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 73 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVW 174
TL GH ++ ++ +P+ P M S S D T VW
Sbjct: 350 TLSGHKNLVSGLSASPENPYMFASVSHDNTCRVW 383
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 31.1 bits (67), Expect = 0.032
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 49 SETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKL 180
S T LR L GH G + + +P + D+ILS S D+T+ + +L
Sbjct: 297 SATGDLRYVLPGHEGSVNHVDFHP-HQDIILSCSSDRTIFLGEL 339
Score = 23.0 bits (47), Expect = 8.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 142 SSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSD 267
S D+ +++W + D NYG+ L G I+D+ S D
Sbjct: 67 SGGMDRQILLWNVFGDVKNYGV----LNGCKGAITDLQWSRD 104
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 30.7 bits (66), Expect = 0.043
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 136 ILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGDYALS 285
+ S RD L W + D P ++ HS +++D+ L+ D + +S
Sbjct: 47 LYSGGRDGQLFGWDIGYDYGKASQPLAKIQAHSAWVNDIALTHDSEGVIS 96
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 29.9 bits (64), Expect = 0.074
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +1
Query: 97 ITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGDY 276
+T + +P I + S DK + +W T+ G ++L+GH + V S DG Y
Sbjct: 420 VTTVMFSPD-GQFIAAGSLDKVIRIW------TSSGTLVEQLHGHEESVYSVAFSPDGKY 472
Query: 277 ALS 285
+S
Sbjct: 473 LVS 475
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 29.5 bits (63), Expect = 0.098
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +1
Query: 82 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 261
GH I+ + P ++LS S D + +W++ D + + GH+ I D+ S
Sbjct: 264 GHTKGISCLRFFPISGHLLLSGSMDNQIKIWEVYHDRSLL----RTFQGHARPIRDLSFS 319
Query: 262 SDGDYALS 285
DG LS
Sbjct: 320 QDGRSFLS 327
>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 29.5 bits (63), Expect = 0.098
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 82 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYG 204
GH ++ I +P D +S++ DKTL +WK+ + G
Sbjct: 106 GHTDIVSSIEVSP-IEDQFVSTANDKTLKLWKMNQSSRCLG 145
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 29.5 bits (63), Expect = 0.098
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 70 GTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKL 180
G L GH WI +A NP D++LS+ + + +W +
Sbjct: 223 GQLRGHAAWIFAVAFNP-VGDLLLSADVEGKIKIWDI 258
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 28.3 bits (60), Expect = 0.23
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 76 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVW 174
L H+G I+ ++ NP P + + S D+ + +W
Sbjct: 379 LQAHDGPISCLSVNPSVPSFVATGSTDRVVKLW 411
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 27.9 bits (59), Expect = 0.30
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +1
Query: 85 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSS 264
H+ ++T IA +PK LS S D L +W + ++ L I+ V S
Sbjct: 348 HSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSIKEKAVSFWNELPEL------ITAVAFSP 401
Query: 265 DGDYALS 285
DG A++
Sbjct: 402 DGGLAIA 408
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.9 bits (59), Expect = 0.30
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +1
Query: 82 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDET 195
GH + NP + ++ S D +++WK+ D T
Sbjct: 79 GHTAAVLDTDWNPFHDQVLASGGDDSKIMIWKVPEDYT 116
Score = 24.2 bits (50), Expect = 3.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 76 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVW 174
L GH+ + + +P +++ SSS D T+ +W
Sbjct: 130 LKGHSRKVGLVQYHPTAANVLASSSADNTIKLW 162
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 27.9 bits (59), Expect = 0.30
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Frame = +1
Query: 82 GHNGWITQIATNPK----YPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLY---GHSHF 240
GH +T +A P YP + SSS+D+TL + L + ++ H
Sbjct: 408 GHTASVTAVALGPLDVNGYPTFLASSSQDRTLKRFNLGSQLNKSDFSNRAVWTIKAHDRD 467
Query: 241 ISDVVLSSDG 270
++ + +S DG
Sbjct: 468 VNAIQVSKDG 477
Score = 27.1 bits (57), Expect = 0.52
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 82 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTR 186
GH+ I + P +LS SRDKT+ VW + +
Sbjct: 187 GHSSVIRGLTFEPT-GSFLLSGSRDKTVQVWNIKK 220
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.9 bits (59), Expect = 0.30
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 76 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQ 213
L GH ++ P+ P +LSS +D +VW + E+ P+
Sbjct: 256 LTGHQKAALSLSWCPEDPTFLLSSGKDGRAMVWNVETGESLGSFPR 301
Score = 24.2 bits (50), Expect = 3.7
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Frame = +1
Query: 7 GVG-W*AAHWGFIKMSETLKLRGTLCGHNGWIT-QIATNPKYPDMILSSSRDKTLIVWKL 180
G+G W A +K E T NG I + N P+++ S + VW +
Sbjct: 90 GIGFWDPA--AILKSDEASASIATYKSENGSILGPLDFNRLQPNLLASGDNKGDVWVWDI 147
Query: 181 TRDETNYGLPQKRLYGHSHFIS 246
+ + LP++ H +S
Sbjct: 148 KHPQQPFALPKQNRSSEVHVVS 169
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 0.40
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 73 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWK 177
TL GH + ++A D+I+S+S D TL VWK
Sbjct: 572 TLRGHTDSVREVAC---LGDLIVSASYDGTLRVWK 603
Score = 24.6 bits (51), Expect = 2.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 127 PDMILSSSRDKTLIVWKL 180
P I+SSSRD T+ +W L
Sbjct: 522 PPYIISSSRDCTIRLWSL 539
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 27.5 bits (58), Expect = 0.40
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = +1
Query: 67 RGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVW-----KLTRDETNYGLPQKRLYGH 231
+ L GH + NP P + + + D+ + +W T ET P + + H
Sbjct: 175 QAVLKGHTAEGFGLCWNPNLPGNLATGAEDQVICLWDVQTQSFTSSETKVISPIAKYHRH 234
Query: 232 SHFISDV 252
+ ++DV
Sbjct: 235 TDIVNDV 241
Score = 26.6 bits (56), Expect = 0.69
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 85 HNGWITQIATNPKYPDMILSSSRDKTLIVWKL 180
H+ I +A NP ++ ++S DKT+ +W L
Sbjct: 280 HSKAINAVAINPFNDYLLATASADKTVALWDL 311
Score = 25.4 bits (53), Expect = 1.6
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 73 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTR 186
TL GH + + +P ++ SSS D+ + +W L +
Sbjct: 320 TLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDLEK 357
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 27.5 bits (58), Expect = 0.40
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = +1
Query: 82 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 261
GH + + +P+ + + ++S DKT+ W L + G+ ++ H +DV+
Sbjct: 220 GHQSNVYCLLFDPQDSEALWTASADKTVREWSLYQ-----GIHEETRMEHPDVCTDVLTL 274
Query: 262 SDGDYA 279
+DG+ A
Sbjct: 275 ADGNIA 280
Score = 23.8 bits (49), Expect = 4.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 82 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETN 198
GH +T+I Y ++SSS D+T+ VW L N
Sbjct: 304 GHYESVTKILQWKSY---LISSSLDQTIRVWDLEYSADN 339
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 27.1 bits (57), Expect = 0.52
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 151 RDKTLI-VWKLTRDETNYGLPQKRL 222
+DKT V K+ +DE NY LPQK +
Sbjct: 186 KDKTNAHVNKIPQDEVNYSLPQKNI 210
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 26.6 bits (56), Expect = 0.69
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 136 ILSSSRDKTLIVWKLTRDETNYGLP 210
I+S SRD TL VWKL ++ LP
Sbjct: 460 IVSGSRDHTLRVWKLPKNTDPPYLP 484
Score = 25.0 bits (52), Expect = 2.1
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 76 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFIS 246
L GH+ I + P+ ++ +S S DK++ VW L+ Y L GH F++
Sbjct: 543 LRGHSLRIYSVLYEPER-NICISGSMDKSIRVWDLSTGTCKYVLE-----GHDAFVT 593
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 1.2
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 139 LSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVL 258
L++S D TL +W L+ ++ ++ LYGH + I+ V +
Sbjct: 2311 LTASLDLTLRLWTLSTNKPIKASLKRVLYGHRYRITCVTV 2350
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 1.2
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 136 ILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGDYALS 285
+ + + D T+ +WK ++ P RL GH + V GDY +S
Sbjct: 238 LATGAADNTVCLWKASQST-----PLLRLEGHLARVGRVAFHPSGDYLVS 282
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 25.8 bits (54), Expect = 1.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 82 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKL 180
GH + + + Y I+SSSRD T VW+L
Sbjct: 301 GHTDNVLGVVVSENY---IISSSRDHTARVWRL 330
Score = 25.0 bits (52), Expect = 2.1
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 121 KYPDMIL-SSSRDKTLIVWKLTRDETNYGLPQKRLYGHS 234
+Y D I+ S S+D+T+ VW + N +LYGHS
Sbjct: 228 QYDDEIMVSGSKDRTVSVW-----DVNSRFILYKLYGHS 261
Score = 23.0 bits (47), Expect = 8.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 76 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLT 183
L GH + + + K +I+++S D+TL W +T
Sbjct: 343 LRGHLASVNSVQYSSK-TGLIVTASSDRTLRTWDIT 377
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 1.2
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 136 ILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDG 270
+L ++DKT VW +T L GH + IS + L+SDG
Sbjct: 247 LLFIAKDKTCEVWDSISSKTITSLT-----GHENRISSLALTSDG 286
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.4 bits (53), Expect = 1.6
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +1
Query: 73 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNY 201
+L GH G + + PK ++ S S D T +W + + +++
Sbjct: 184 SLSGHTGNVLAVDWCPKNEFVLASGSADGTCRLWDIRKVSSSF 226
Score = 23.4 bits (48), Expect = 6.5
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +1
Query: 52 ETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLP-QKRLYG 228
+TL H IT + P + SSS D TL VW ++ + Y + +Y
Sbjct: 91 DTLNAVPARTSHKFGITDLHWFPFDNGIFTSSSFDHTLKVWDVSTLQEAYTFTMEDMIYS 150
Query: 229 HS 234
H+
Sbjct: 151 HA 152
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 1.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 76 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVW 174
L GH +TQI N D++ S ++DK + VW
Sbjct: 6 LQGHERPLTQIKYNHD-GDLLFSCAKDKVINVW 37
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 1.6
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +1
Query: 31 WGFIKMSETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWK 177
W F K + L GH G + ++ +P I S + D L +WK
Sbjct: 357 WNFNKANP---LEFVHAGHKGTVNEVDFDPFEAQCIASVADDNELHIWK 402
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 25.0 bits (52), Expect = 2.1
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +1
Query: 43 KMSETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDE 192
K+ + + L GH + IA + + + + SRDK++ +W+ T D+
Sbjct: 363 KIDDDWECTAALEGHENEVKCIAWSCN-GNYLATCSRDKSVWIWEATEDD 411
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 25.0 bits (52), Expect = 2.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 76 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDE 192
L HNG + + +P + S RDKT+ +W T ++
Sbjct: 217 LAAHNGVVLCVNYSPNGV-FLASCGRDKTIRIWDSTSNK 254
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 25.0 bits (52), Expect = 2.1
Identities = 16/64 (25%), Positives = 26/64 (40%)
Frame = +1
Query: 85 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSS 264
H + ++ NP + ++ S D +W +T E +L GH I + S
Sbjct: 60 HKDSVFSVSINPVHSNLCASGGGDDLGYIWDITTGEQIC-----QLTGHKDSIVAIDWSF 114
Query: 265 DGDY 276
DG Y
Sbjct: 115 DGTY 118
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 24.6 bits (51), Expect = 2.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 211 QKRLYGHSHFISDVVLSSDGDYALS 285
QK L GH+ ++ + S+DG++ LS
Sbjct: 38 QKELTGHTGCVNTLDWSADGEFLLS 62
>SPCC63.06 |||human WDR89 family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 331
Score = 24.6 bits (51), Expect = 2.8
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 49 SETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDE 192
SE +R HN IT + +PK +++L+ S D + + T++E
Sbjct: 133 SEQKLIRQWNDAHNDDITHLQFHPKDNELLLTGSVDGLVSLLDTTKEE 180
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 24.2 bits (50), Expect = 3.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 139 LSSSRDKTLIVWKLTRDETNYGL 207
LS S DKT+ VW L+ Y L
Sbjct: 140 LSGSDDKTVKVWDLSTGAVQYDL 162
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 24.2 bits (50), Expect = 3.7
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +1
Query: 103 QIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLP-QKRLYGHSHFISDVVLSSDGDYA 279
QI+ N Y I S+S + + VWK + + L GH D+ SSDG Y
Sbjct: 153 QISGNEIY---IASASAFQQIYVWKFNYNNPPSCVSIDTYLVGHEGACFDLKFSSDGRYL 209
Query: 280 LS 285
S
Sbjct: 210 CS 211
>SPAC4F10.18 |||WD repeat protein, human NUP37
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 23.8 bits (49), Expect = 4.9
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Frame = +1
Query: 55 TLKLRGTLCGHNGWITQI-------ATNPKYPDMILSSSRDKTLIVWKLT 183
T + G GH+ ++ I A N +I S D TLI+W+LT
Sbjct: 123 TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 172
>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 23.8 bits (49), Expect = 4.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 246 RNEMGVTVQTLLWQAVVGFVSS*LPH 169
R+ M + +QT Q ++GF LPH
Sbjct: 222 RSIMNLVLQTWRLQGILGFYKGFLPH 247
>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 315
Score = 23.4 bits (48), Expect = 6.5
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +1
Query: 157 KTLIVWKLTRDETNYGLPQKRLYGHSHFISDV---VLSSD 267
KT VWK++R + YG+ + L ++ + LSSD
Sbjct: 36 KTSFVWKISRIVSLYGIDEIILLEDPEYVQNTQVHTLSSD 75
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 23.4 bits (48), Expect = 6.5
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 58 LKLRGTLC-GHNGWITQIATNPKYPDMILSSSRDKTLIVW 174
L + LC G G+I + A + D +LS S TL VW
Sbjct: 410 LAMAFVLCFGALGYICESAQSDTVFDWLLSISNLATLFVW 449
>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 140
Score = 23.4 bits (48), Expect = 6.5
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +1
Query: 25 AHWGFIKMSETLKLRGTLCGHNGW 96
A W F+K+ +TL++ +C + W
Sbjct: 82 ATWSFMKLLKTLRIVIYICTSDHW 105
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 23.0 bits (47), Expect = 8.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 87 MATKRASEF*CFTHFYKSPVSSSPANAS 4
+A +A F T FYK +S PAN S
Sbjct: 906 VANVKARLFPSMTDFYKEILSWEPANQS 933
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 23.0 bits (47), Expect = 8.5
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 76 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKL 180
L GH +T + + + PD++ + S D ++ W L
Sbjct: 318 LHGHTRAVTDMNWHRQNPDVLATCSIDSSVHCWDL 352
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 23.0 bits (47), Expect = 8.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -2
Query: 227 PYRRFCGRP*LVSSLVNFHTIRVLSRDEDKIMSG 126
P+ R+ V+S+ FH +V RD+ + G
Sbjct: 141 PFARWLAMNPKVTSIKRFHIAKVYRRDQPAMTKG 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,193,236
Number of Sequences: 5004
Number of extensions: 20763
Number of successful extensions: 120
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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