Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P22
         (232 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    26   0.58 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   0.77 
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   1.3  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    24   2.3  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    24   3.1  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   4.1  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    23   4.1  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    23   5.4  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   5.4  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    23   7.2  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    23   7.2  
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    23   7.2  
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar...    22   9.5  

>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
 Frame = +1

Query: 67  APDETPCADARSWVKDEQLCDGVPQCADR-------SDEMHCPTTPGQKP 195
           AP+  P   +  +VK++ + DGVP   +        SD    P+ PG+ P
Sbjct: 498 APEMIPSISSPDFVKEQCMLDGVPTIGNGAGNYKNISDLSGAPSPPGEMP 547


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
 Frame = -1

Query: 82  ASRPGRTAPPAGH----SGRSPARPHR 14
           +SRP   APPAGH    +  SP  P+R
Sbjct: 215 SSRPSSFAPPAGHAPNVTSESPKFPNR 241


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 161 SSLRSAHCGTPSQSCSSLTQDLASAQGVSSG-AHGPTGRAF 42
           S + S    TP++S SSL   L S   + SG A  PT  +F
Sbjct: 302 SLVNSTEFSTPNESLSSLPSILPSIPSLESGKAELPTDGSF 342


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 134  TPSQSCSSLTQDLASAQGVSSGAHGPTGRAFGAQSRSSTPPGP 6
            +PS S SS     + A   SS ++ PT  ++   S S +P  P
Sbjct: 1555 SPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSP 1597


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 176 VGQCISSLRSAHCGTPSQSCSSLTQDLASAQ 84
           V +C+S L+  HC  P ++   L    +S Q
Sbjct: 22  VEECLSKLKEQHCYVPMRTIGRLRLRKSSDQ 52


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 76  RPGRTAPPAGHSGRSPARPHRPGLV 2
           RP    P AG  G +P    +PGL+
Sbjct: 328 RPVAPRPSAGAGGANPPAASQPGLL 352


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 142 CADRSDEMHCPTTPGQKPV 198
           C  +S  +HCP+T G+  V
Sbjct: 56  CRKKSAPLHCPSTNGKTNV 74


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 215 YPNGQSTGF*PGVVGQCISSLRSAHCGTPSQSCSSLTQ 102
           +P GQ     P V+  C+S L S        +C  ++Q
Sbjct: 610 FPQGQLACLNPQVLSHCLSHLNSPDSLLRQWACLCISQ 647


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -3

Query: 134 TPSQSCSSLTQDLASAQGVSSGAHGPTGRAFGAQSRSSTPP 12
           T +   SSL  D++S    + G+ G T +       +  PP
Sbjct: 56  TSTNQISSLKVDVSSPPSTAPGSAGSTPKTTPVSLNAGVPP 96


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -3

Query: 161 SSLRSAHCGTPSQSCSSLTQDLASAQGVSSGAHGPTGRAFGAQSRSSTPP 12
           S L ++   TPS + S +     ++ G ++ +  PT  A    S S+  P
Sbjct: 660 SGLPTSSASTPSSNSSIVPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAP 709


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +3

Query: 45  CPAGGAVRPGRDAL-RGRQVLGQRRTA 122
           CP+G  +RP  D L  G Q    +R +
Sbjct: 68  CPSGSLLRPASDGLSTGEQEFVDKRVS 94


>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 125 QSCSSLTQDLASAQGVSSG 69
           QS SSL  D+AS Q V  G
Sbjct: 90  QSLSSLNSDIASLQQVVKG 108


>SPAC24C9.09 |||mitochondrial threonine-tRNA
           ligase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 103 WVKDEQLCDGVPQCADRSDEMHCPTTPGQKPVDCP 207
           W   E+    V +  +  DE H   T G KP++CP
Sbjct: 114 WQNYEKEIFRVEESRNVEDE-HSNATYGLKPMNCP 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.140    0.493 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 951,020
Number of Sequences: 5004
Number of extensions: 14597
Number of successful extensions: 44
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)