Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P20
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    27   0.79 
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    25   3.2  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    25   4.2  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   4.2  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   5.5  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   5.5  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    24   9.7  

>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 176 DILAAFVPYKRSPLFPPWIMALW*IFLYQIIY 271
           D+L  F P  +   FPPW + L  IF   I+Y
Sbjct: 204 DLLIIFAPLLKLQGFPPWQLRLCEIFHDPILY 235


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 106 AKACFFTLYSTGFDHNLT*CVDRRYPSGICSIQT 207
           A A    LY  G +  L  C+D + P G+C++ T
Sbjct: 106 ATASKLFLYQFGNNLKLQRCLDTQNPKGLCAMVT 139


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +2

Query: 143 LTTISLDVLTEDILAAFVPYK---RSPLFPPWIMALW*I--FLYQ 262
           +T I L  +  +IL   V YK       FP W+ A W I  FLYQ
Sbjct: 50  ITLIGLGFVVINILTMLV-YKYHYEMDAFPSWVYASWAIGLFLYQ 93


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 10/47 (21%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = -1

Query: 368 IQRDWRSGWFYHM----QNRRKRTYVIKTYGHDGGAYILFGIKIFTI 240
           I  +W+S W  H      ++ K+ Y++  + +  G   +  ++++TI
Sbjct: 37  IAENWKSYWKSHYPFVKNDKGKKKYILSMFPYPSGLLHIGHVRVYTI 83


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 116 VFLHCIALALTTISLDVLTEDILAAFVPYKR--SPLFPPWI 232
           +F+ C  LALTT++  +L    +A F  + R     +P W+
Sbjct: 45  LFVECFRLALTTVN-PLLLRSSVACFETFLRRLRAQYPTWL 84


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 78  SKDFYIAVPSQSMFFYT 128
           S+  Y+AVPS + +FYT
Sbjct: 164 SRPVYLAVPSDAGYFYT 180


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 284 DGGAYILFGIKIFTIMPLSREETGDYVCMEQMPL 183
           +GG   L  I IF ++P+S  ET +++  E+  L
Sbjct: 226 EGGVTFLCAIVIFLVLPVS-VETANFLTDEEKTL 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,827,939
Number of Sequences: 5004
Number of extensions: 40157
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)