Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_P20
(392 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0512 - 4259162-4259849,4260209-4260432,4260854-4261071,426... 27 4.1
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510... 27 4.1
01_05_0619 - 23737178-23737378,23737460-23737516,23737597-237377... 27 4.1
08_01_0774 + 7482311-7482919,7484012-7484077,7484211-7484384,748... 23 4.4
07_03_1319 + 25790112-25790283,25790362-25790429 27 5.4
05_03_0184 + 9339939-9340896,9341003-9341083,9341166-9341383,934... 27 5.4
03_05_0232 + 22174516-22174768,22175278-22175471,22175557-221756... 27 5.4
08_02_0260 + 14990324-14990916,14991055-14991245,14997427-149974... 27 7.1
05_07_0364 - 29611149-29611211,29611441-29611623,29611796-296118... 26 9.4
>05_01_0512 -
4259162-4259849,4260209-4260432,4260854-4261071,
4261154-4261234,4261342-4262299
Length = 722
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +3
Query: 237 HYGKYFYTK*YICTTVMPVRFDYVRTFSPILHMVKPPRPPVP 362
HY K TK + T+ P D+V SP+ V PP PP+P
Sbjct: 110 HYMKAAGTK-PLTITIDPSAADFVGQESPVSTFVPPP-PPLP 149
>04_04_1696 +
35448667-35449641,35449726-35450562,35450667-35451001,
35451371-35451497,35451594-35451752,35451872-35453053,
35453164-35453424,35453513-35453761
Length = 1374
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 253 KYLP*CHYPGRKQGTTFVWNKCR*DIFCQH 164
+ LP H PG +G ++W +C + C+H
Sbjct: 635 RLLPQHHLPGESEGKIWMWTRC---LRCEH 661
>01_05_0619 -
23737178-23737378,23737460-23737516,23737597-23737755,
23739477-23739621,23739725-23740136,23740693-23740855
Length = 378
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 391 KGNILRKPYKGTGGRGGFTICKIGE 317
+G+ R+PY+G G RGG+T + G+
Sbjct: 126 RGHGPRQPYRGGGRRGGYTGGEAGD 150
>08_01_0774 +
7482311-7482919,7484012-7484077,7484211-7484384,
7484473-7484603,7484726-7484802,7484981-7485064,
7487885-7488066,7488189-7488266,7489813-7489945,
7491610-7491670,7491861-7491942,7492143-7492271,
7492510-7492653,7493102-7493204,7493382-7493513,
7494127-7494485,7495149-7495229,7495384-7495450,
7495636-7495706,7496087-7496178,7496365-7496458,
7497692-7497789,7498206-7498341,7498599-7498618,
7498781-7498876,7498973-7499060,7499171-7499288,
7499738-7499759,7500203-7500326,7500625-7500702,
7500837-7500955,7501816-7501869,7502260-7502362,
7503133-7503261,7503345-7503453,7503788-7503819
Length = 1424
Score = 23.0 bits (47), Expect(2) = 4.4
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
Frame = +3
Query: 342 PPRPPVPL--YGFLRMLP 389
PP PP+PL FL M+P
Sbjct: 165 PPMPPIPLPHMPFLPMMP 182
Score = 22.6 bits (46), Expect(2) = 4.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 315 FSPILHMVKPPRPPVP 362
F+P L + PP PP+P
Sbjct: 153 FAPPLPLPPPPPPPMP 168
>07_03_1319 + 25790112-25790283,25790362-25790429
Length = 79
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 294 RFDYVRTFSPILHMVKPPRPPVP 362
R+ +R+ SP+ H V RPPVP
Sbjct: 14 RWSVLRSTSPVGHQVGSRRPPVP 36
>05_03_0184 +
9339939-9340896,9341003-9341083,9341166-9341383,
9341796-9342019,9342409-9343096
Length = 722
Score = 27.1 bits (57), Expect = 5.4
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +3
Query: 237 HYGKYFYTK*YICTTVMPVRFDYVRTFSPILHMVKPPRPPVP 362
HY K TK + T+ P D+V SP+ V PP PP+P
Sbjct: 110 HYMKAAGTK-PLTFTIDPSAADFVGQESPVSTFVPPP-PPLP 149
>03_05_0232 +
22174516-22174768,22175278-22175471,22175557-22175604,
22176707-22176784,22178073-22178145,22178406-22178577,
22179652-22180083,22180209-22180400,22180696-22180771
Length = 505
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 305 RTYVFAYFAYGKTTPTSSPFVWFPQNV 385
R Y + Y +YG+ S + WFP V
Sbjct: 389 RIYGWGYNSYGQAANEKSTYAWFPSPV 415
>08_02_0260 +
14990324-14990916,14991055-14991245,14997427-14997495,
14998134-14999221
Length = 646
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 89 LYSRAQPKHVFLHCIALALTTISLDVLTEDILAAFVPYKRSPLFPPW 229
L S ++ K + + IA + + + VL +LA F+ YK+ PW
Sbjct: 273 LVSESKKKRIKTYIIASTSSLLGISVL---VLAVFLVYKKHKCLLPW 316
>05_07_0364 -
29611149-29611211,29611441-29611623,29611796-29611853,
29612150-29612207,29612504-29612561,29612859-29612916,
29613214-29613271,29613568-29613625,29613923-29613980,
29614277-29614334,29614631-29614688,29614983-29615040,
29615337-29615394,29615691-29615748,29616045-29616102,
29616400-29616457,29616755-29616812,29617109-29617166,
29617463-29617520,29617817-29617874,29618171-29618228,
29618525-29618582,29618878-29618935,29619233-29619290,
29619942-29619999,29620297-29620376,29620649-29620706,
29621001-29621058,29621353-29621410,29621707-29621764,
29622415-29622472,29622767-29622824,29623121-29623164,
29623475-29623532,29623829-29623886,29624537-29624594,
29624889-29624946,29625243-29625300,29625597-29625654,
29626305-29626400,29626697-29626792,29627797-29627892,
29628188-29628283,29629996-29630053,29630350-29630407,
29630704-29630799,29631096-29631191,29632196-29632253,
29632549-29632644,29633648-29633743,29634040-29634042
Length = 1114
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 311 YVFAYFAYGKTTPTSSPFVWFPQNVTL 391
Y AY + KTT TS P +W + TL
Sbjct: 48 YFVAYQRFAKTTATSWPMLWTLRYSTL 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,696,631
Number of Sequences: 37544
Number of extensions: 258358
Number of successful extensions: 734
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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