Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_P20
(392 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81585-2|CAB04682.2| 303|Caenorhabditis elegans Hypothetical pr... 29 0.90
AF106591-1|AAD47131.2| 710|Caenorhabditis elegans Hypothetical ... 29 1.2
Z83114-3|CAB05551.1| 142|Caenorhabditis elegans Hypothetical pr... 28 2.1
U23139-13|AAK31484.1| 156|Caenorhabditis elegans Hypothetical p... 26 8.4
U23139-12|AAU20847.1| 262|Caenorhabditis elegans Hypothetical p... 26 8.4
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein. 26 8.4
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso... 26 8.4
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso... 26 8.4
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 26 8.4
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso... 26 8.4
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein. 26 8.4
>Z81585-2|CAB04682.2| 303|Caenorhabditis elegans Hypothetical
protein T05E12.2 protein.
Length = 303
Score = 29.5 bits (63), Expect = 0.90
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Frame = +2
Query: 140 ALTTISLDVLTEDILAAFVP---YKRSPLFPPWIM 235
A + ISL + E ++AA++P YK P+FP +I+
Sbjct: 100 ARSIISLAIAVERVVAAYIPIYFYKYRPIFPTFII 134
>AF106591-1|AAD47131.2| 710|Caenorhabditis elegans Hypothetical
protein T01A4.3 protein.
Length = 710
Score = 29.1 bits (62), Expect = 1.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 209 YVCMEQMPLGYLLSTHQVRLWSK 141
Y+C+E+M +G+ H +LW K
Sbjct: 647 YICVEEMGIGFSFRRHVEKLWMK 669
>Z83114-3|CAB05551.1| 142|Caenorhabditis elegans Hypothetical
protein K09B11.4 protein.
Length = 142
Score = 28.3 bits (60), Expect = 2.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 209 YVCMEQMPLGYLLSTHQVRLWSK 141
Y+C E+M +G+ H +LW K
Sbjct: 78 YICAEEMGIGFSFRRHVEKLWMK 100
>U23139-13|AAK31484.1| 156|Caenorhabditis elegans Hypothetical
protein F13H8.1a protein.
Length = 156
Score = 26.2 bits (55), Expect = 8.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 300 DYVRTFSPILHMVKPPRPPV 359
D +R LH V PP PPV
Sbjct: 24 DQIRRSQQFLHYVPPPEPPV 43
>U23139-12|AAU20847.1| 262|Caenorhabditis elegans Hypothetical
protein F13H8.1b protein.
Length = 262
Score = 26.2 bits (55), Expect = 8.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 300 DYVRTFSPILHMVKPPRPPV 359
D +R LH V PP PPV
Sbjct: 24 DQIRRSQQFLHYVPPPEPPV 43
>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
Length = 4250
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/60 (21%), Positives = 23/60 (38%)
Frame = -1
Query: 293 YGHDGGAYILFGIKIFTIMPLSREETGDYVCMEQMPLGYLLSTHQVRLWSKPVLYSVKKH 114
+GH + FG I+ ++ G Y C + LG + +R K + +H
Sbjct: 1002 HGHRFRTFYDFGFVSLDILGFYAQDAGTYTCRAENSLGQAETVATIRCAPKDAILGAVQH 1061
>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform b protein.
Length = 4203
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/60 (21%), Positives = 23/60 (38%)
Frame = -1
Query: 293 YGHDGGAYILFGIKIFTIMPLSREETGDYVCMEQMPLGYLLSTHQVRLWSKPVLYSVKKH 114
+GH + FG I+ ++ G Y C + LG + +R K + +H
Sbjct: 919 HGHRFRTFYDFGFVSLDILGFYAQDAGTYTCRAENSLGQAETVATIRCAPKDAILGAVQH 978
>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform a protein.
Length = 4488
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/60 (21%), Positives = 23/60 (38%)
Frame = -1
Query: 293 YGHDGGAYILFGIKIFTIMPLSREETGDYVCMEQMPLGYLLSTHQVRLWSKPVLYSVKKH 114
+GH + FG I+ ++ G Y C + LG + +R K + +H
Sbjct: 1240 HGHRFRTFYDFGFVSLDILGFYAQDAGTYTCRAENSLGQAETVATIRCAPKDAILGAVQH 1299
>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform d protein.
Length = 4369
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/60 (21%), Positives = 23/60 (38%)
Frame = -1
Query: 293 YGHDGGAYILFGIKIFTIMPLSREETGDYVCMEQMPLGYLLSTHQVRLWSKPVLYSVKKH 114
+GH + FG I+ ++ G Y C + LG + +R K + +H
Sbjct: 1240 HGHRFRTFYDFGFVSLDILGFYAQDAGTYTCRAENSLGQAETVATIRCAPKDAILGAVQH 1299
>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform c protein.
Length = 4447
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/60 (21%), Positives = 23/60 (38%)
Frame = -1
Query: 293 YGHDGGAYILFGIKIFTIMPLSREETGDYVCMEQMPLGYLLSTHQVRLWSKPVLYSVKKH 114
+GH + FG I+ ++ G Y C + LG + +R K + +H
Sbjct: 1240 HGHRFRTFYDFGFVSLDILGFYAQDAGTYTCRAENSLGQAETVATIRCAPKDAILGAVQH 1299
>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
Length = 4219
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/60 (21%), Positives = 23/60 (38%)
Frame = -1
Query: 293 YGHDGGAYILFGIKIFTIMPLSREETGDYVCMEQMPLGYLLSTHQVRLWSKPVLYSVKKH 114
+GH + FG I+ ++ G Y C + LG + +R K + +H
Sbjct: 935 HGHRFRTFYDFGFVSLDILGFYAQDAGTYTCRAENSLGQAETVATIRCAPKDAILGAVQH 994
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,072,061
Number of Sequences: 27780
Number of extensions: 226515
Number of successful extensions: 612
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -