Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P20
         (392 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.54 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   0.95 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   1.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   2.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   2.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   2.2  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   3.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   6.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   6.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   6.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   8.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   8.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.54
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 242  IMPLSREETGDYVCMEQMPLGYLLSTHQVRLWSKP 138
            I  + R + G+Y C  +   G+   THQ+ + + P
Sbjct: 1333 IKEVDRTDAGEYSCYVENTFGHDTVTHQLIVHAPP 1367


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 0.95
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -1

Query: 251 IFTIMPLSREETGDYVCMEQMPLGYLLSTHQVRLWSKP 138
           + +I  L+ E +GDY C+   P   +  T ++++   P
Sbjct: 673 LLSITNLAAEHSGDYTCVAANPAAEVRYTAKLQVKVPP 710



 Score = 22.2 bits (45), Expect = 2.2
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 224 EETGDYVCMEQMPLGYLLSTHQVRLWSKPVLYSVKK-HALAG 102
           E+ G+Y CM +   G +    ++ ++  P +  + K  A+AG
Sbjct: 492 EDGGEYSCMAENRAGKVTHAARLNVYGLPYIRLIPKVTAVAG 533



 Score = 20.2 bits (40), Expect = 8.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 110 KHVFLHCIALALTT 151
           KHV LHC A  + T
Sbjct: 725 KHVALHCQAQGVPT 738


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 217 VSSLDNGIMVNIFIPNNIYAPPSCPYVL 300
           VS++ NG++V IF+       PS  +V+
Sbjct: 65  VSAMGNGMVVYIFLSTKSLRTPSNLFVI 92


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 315 FSPILHMVKPPRPPVP 362
           F  ++  + PP PPVP
Sbjct: 171 FQTVVASMDPPEPPVP 186


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 238 IMVNIFIPNNIY 273
           IM+ IFIP NIY
Sbjct: 411 IMLIIFIPRNIY 422


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 224 EETGDYVCMEQMPLGYLLSTHQVRLWSKPVLYSVKK-HALAG 102
           E+ G+Y CM +   G +    ++ ++  P +  + K  A+AG
Sbjct: 492 EDGGEYSCMAENRAGKVTHAARLNVYGLPYIRLIPKVTAVAG 533



 Score = 20.2 bits (40), Expect = 8.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 110 KHVFLHCIALALTT 151
           KHV LHC A  + T
Sbjct: 721 KHVALHCQAQGVPT 734


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 217 VSSLDNGIMVNIFIPNNIYAPPSCPYVL 300
           VS + NG++V IF+       PS  +V+
Sbjct: 31  VSVMGNGMVVYIFLSTKSLRTPSNLFVI 58


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 254 KIFTIMPLSREETGDYVCME 195
           K FT    S+  TG+Y C++
Sbjct: 213 KFFTDYCNSKTNTGEYSCLK 232


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 254 KIFTIMPLSREETGDYVCME 195
           K FT    S+  TG+Y C++
Sbjct: 213 KFFTDYCNSKTNTGEYSCLK 232


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 263 IIYMHHRHARTF*LRTYVFAYFAY 334
           I+  HHR+A T  +  +V   F Y
Sbjct: 315 ILNYHHRNADTHEMSEWVKVVFLY 338


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 342 PPRPPVPLY 368
           PP PP+PL+
Sbjct: 439 PPLPPLPLH 447


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 342 PPRPPVPLY 368
           PP PP+PL+
Sbjct: 439 PPLPPLPLH 447


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,892
Number of Sequences: 438
Number of extensions: 3180
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)