Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P19
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   1.7  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    26   1.7  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    24   5.1  
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    24   5.1  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    24   5.1  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    24   6.7  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    24   6.7  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      23   8.8  

>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 242 TYQDAVMWYKNLDKLIEYSNLKAAKD 319
           TY+DA      LD ++EY N  A++D
Sbjct: 127 TYEDAPSQLDILDNVVEYMNKTASQD 152


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 170 MDYVSNQAQNYRTNNVIITMGGDFTYQDAVMWYKNLDKLIEYSNLKA 310
           + Y++  + N     V++      T + A+  Y+NL+ LI+ +NLKA
Sbjct: 224 LQYLNGLSDNKSVPRVLVVSP---TRELAIQTYENLNSLIQGTNLKA 267


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 220 YYIVCPVVLSLITHVI 173
           YY   P+VLSL+T VI
Sbjct: 230 YYETSPLVLSLVTEVI 245


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +2

Query: 137 LFNVDEKIALFMDYVSNQAQNYRTNNVIITMGGDFTYQ 250
           + N D+KI + ++Y  +Q + Y  + +   +GG+  Y+
Sbjct: 215 ILNRDKKIEVRLNYQIDQKKEYLLSLIKDNLGGNIGYR 252


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 32  DIFTGVLYNTYSPPP 76
           D FT +LYN  SP P
Sbjct: 368 DTFTAILYNDNSPQP 382


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -1

Query: 158 SFRRH*REASPDRPLSDRRRTVYRNRIQAAASM 60
           SF R  R  SP RPL   R    R+    +ASM
Sbjct: 207 SFNRLSRNHSPTRPLLGNRDLFRRSSNHVSASM 239


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +2

Query: 65  SPPPGFCF 88
           SPPPGFC+
Sbjct: 130 SPPPGFCY 137


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 131 SPDRPLSDRRRTVYRNRIQ 75
           +P+ PLS R  T+ +NR++
Sbjct: 64  TPESPLSKRNPTIKQNRVR 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,313,420
Number of Sequences: 5004
Number of extensions: 22717
Number of successful extensions: 57
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)