Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_P19
(326 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937... 70 5e-13
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245... 67 4e-12
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850 41 2e-04
05_04_0246 + 19350362-19350442,19351250-19351383,19351847-193518... 27 4.6
05_01_0335 + 2652334-2652340,2652459-2652550,2652642-2653362,265... 27 4.6
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244... 27 4.6
04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814 26 6.1
10_08_0245 + 16138402-16138548,16138648-16138701,16139106-161391... 26 8.0
09_06_0185 - 21422946-21423671,21423746-21423924,21424004-214242... 26 8.0
05_03_0107 - 8470386-8470559,8470694-8471737 26 8.0
>11_05_0014 +
18392622-18392834,18393064-18393147,18393709-18393797,
18393889-18394063,18394370-18394489,18394591-18394677,
18394755-18394826,18395166-18395279,18395387-18395487,
18395576-18395669,18395794-18395961,18396287-18396352,
18396475-18396531,18396708-18396927,18397015-18397151,
18397573-18397641,18397722-18397781,18397927-18397998,
18398171-18398218,18398376-18398495,18398743-18398808,
18399341-18399453,18399821-18399905,18400246-18400356,
18400436-18400531,18401075-18401143,18401235-18401453
Length = 974
Score = 69.7 bits (163), Expect = 5e-13
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Frame = +2
Query: 20 GEASDIFTGVLYNTYSPPPG-FCFXXXXXXXXXXXXXXSPLFNVDEKIALFMDYVSNQAQ 196
G ++DIF G+ Y PPPG F F +NV++++ F+ QA
Sbjct: 223 GSSADIFAGIFPKNYEPPPGQFYFEVDDTSPIVQDDPLLFDYNVEQRVDDFVAAAIAQAN 282
Query: 197 NYRTNNVIITMGGDFTYQDAVMWYKNLDKLIEYSN 301
RTN+V+ TMG DF YQ A W++ +DKLI Y N
Sbjct: 283 ITRTNHVMFTMGTDFKYQYAESWFRQMDKLIHYVN 317
>10_01_0232 +
2456449-2456652,2456814-2456897,2459113-2459201,
2459245-2459452,2459764-2459883,2460004-2460087,
2460171-2460242,2460342-2460455,2460852-2460952,
2461024-2461117,2461265-2461432,2461539-2461616,
2461908-2461973,2462052-2462108,2462353-2462572,
2462867-2463003,2465379-2465450,2465530-2465577,
2465681-2465806,2465982-2466047,2466508-2466620,
2467348-2467432,2467885-2467980,2468067-2468114,
2468190-2468258,2468393-2468581
Length = 935
Score = 66.9 bits (156), Expect = 4e-12
Identities = 35/94 (37%), Positives = 48/94 (51%)
Frame = +2
Query: 20 GEASDIFTGVLYNTYSPPPGFCFXXXXXXXXXXXXXXSPLFNVDEKIALFMDYVSNQAQN 199
G +S IFT YSPP GF F +N+ E++ F+ QA
Sbjct: 231 GSSSQIFTNAFPVHYSPPDGFGFEIFDDFVPVQDDMLLFDYNLKERVNDFVAAALKQANV 290
Query: 200 YRTNNVIITMGGDFTYQDAVMWYKNLDKLIEYSN 301
RTN+++ TMG DF YQ A W++N+D+LI Y N
Sbjct: 291 TRTNHIMWTMGDDFNYQYAESWFRNMDRLINYVN 324
>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
Length = 1173
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Frame = +2
Query: 143 NVDEKIALFMDYVSNQAQNYRTNNVIITMGGDFTY---QDAVMWYKNLDKLIEYSN 301
NV E+ +D ++ YRTN ++I +G DF Y ++A ++N +KL +Y N
Sbjct: 385 NVQERAMKLLDQYRKKSTLYRTNTLLIPLGDDFRYVSTEEAEAQFRNYEKLFDYIN 440
>05_04_0246 +
19350362-19350442,19351250-19351383,19351847-19351895,
19352503-19352667,19353358-19353414,19353524-19353598
Length = 186
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 185 NQAQNYRTNNVIITMGGDFTYQDAVMWYK 271
N + + + GGD Y+D V+W+K
Sbjct: 111 NSRVDVTVGSALDIFGGDLPYKDVVLWHK 139
>05_01_0335 +
2652334-2652340,2652459-2652550,2652642-2653362,
2653456-2653533,2653658-2653684,2653871-2653938,
2654089-2654174,2654251-2654333,2654478-2654620,
2654709-2654810,2654906-2655199,2655282-2655404,
2655733-2656119
Length = 736
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -2
Query: 100 AQYIETESRRRRVCVIQNSSEYIGCFSDII 11
AQ + T+ RR C+I ++ +Y+ F ++
Sbjct: 530 AQRMNTDIRRAIFCIIMSAEDYVDAFEKLL 559
>04_04_1218 - 31822915-31823141,31823418-31823832,31824090-31824440,
31825391-31825549,31825965-31826093,31826257-31826460,
31827200-31827412,31827547-31830912,31830999-31831150,
31831912-31832407,31832646-31833456,31833537-31834728,
31834856-31834922
Length = 2593
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 116 LSDRRRTVYRNRIQAAASMC-YTELQ*IYR 30
+SDRRR+++R I + +C T LQ YR
Sbjct: 1976 ISDRRRSLFRENIPIDSKLCVMTVLQFCYR 2005
>04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814
Length = 775
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 200 SFELDYSRNP*TTQSFRRH*REASPDRPLSDRRRTVYRNR 81
S + D R P ++S+ ++ R S D L RRR+ R+R
Sbjct: 181 SHDYDDQRRPTMSRSYSQNDRRVSSDSRLDRRRRSRSRSR 220
>10_08_0245 +
16138402-16138548,16138648-16138701,16139106-16139171,
16139427-16139483,16140490-16140610,16140704-16140744,
16140835-16140886,16141555-16141623,16141697-16141768,
16141890-16142045,16143067-16143284,16143359-16143398,
16143484-16143602,16143726-16143827,16144256-16144300,
16144890-16145030,16145172-16145267,16145415-16145516,
16145611-16145709
Length = 598
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 197 NYRTNNVIITMGGDFTYQDAVMWYKNLDKLIEYSNLKAAKDG 322
N R + ITM F Q+A++W + ++ +I+ A DG
Sbjct: 58 NKREKHQRITMAA-FNIQEALIWKEKIEMVIDQQQGVVASDG 98
>09_06_0185 -
21422946-21423671,21423746-21423924,21424004-21424241,
21424319-21424759
Length = 527
Score = 25.8 bits (54), Expect = 8.0
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 236 DFTYQDAVMWYKNLDKLIEY 295
DF + D+V WY D++++Y
Sbjct: 64 DFPWPDSVDWYPRHDQVVDY 83
>05_03_0107 - 8470386-8470559,8470694-8471737
Length = 405
Score = 25.8 bits (54), Expect = 8.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 112 DSGRSGLASLQCRRKDCVVYGLRE*SSSKLQDKQCNNNNGRGFH 243
+ GR GL +K+ G SSSK++ K+ NG G H
Sbjct: 342 EDGRLGLVRKAKLKKNKEETGSSSSSSSKVKKKKNKEENGVGLH 385
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,483,160
Number of Sequences: 37544
Number of extensions: 147479
Number of successful extensions: 334
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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