Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_P19
(326 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical pr... 86 6e-18
Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical pr... 36 0.009
Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical pr... 36 0.009
Z81534-2|CAB04344.2| 226|Caenorhabditis elegans Hypothetical pr... 29 0.79
Z81105-4|CAB03219.1| 299|Caenorhabditis elegans Hypothetical pr... 28 1.8
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 27 4.2
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr... 25 9.7
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ... 25 9.7
>U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical
protein F55D10.1 protein.
Length = 955
Score = 85.8 bits (203), Expect = 6e-18
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Frame = +2
Query: 11 DDIGEASDIFTGVLYN-TYSPPPGFCFXXXXXXXXXXXXXXSPLFNVDEKIALFMDYVSN 187
DDI + + +FTG +N Y PP GFC+ +NV EK+ F+D+V N
Sbjct: 216 DDITD-NKLFTGAFFNDNYGPPEGFCWDSLCGDDPIMDNLNIEGYNVKEKVDAFVDHVKN 274
Query: 188 QAQNYRTNNVIITMGGDFTYQDAVMWYKNLDKLIEYSNLKAAK 316
QA + TN V++ MG DF Y +A WY NLDKLI+Y N +K
Sbjct: 275 QAAHQSTNQVMLLMGSDFQYTNANSWYVNLDKLIKYVNADTSK 317
>Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical
protein F58H1.1b protein.
Length = 1145
Score = 35.5 bits (78), Expect = 0.009
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 143 NVDEKIALFMDYVSNQAQNYRTNNVIITMGGDFTYQDAVMW---YKNLDKLIEYSNLKA 310
NV + + D ++Q ++ N + +G DF Y W Y+N KL EY N K+
Sbjct: 412 NVAHRAEMIYDQYRKKSQLFKNNVIFQPLGDDFRYDIDFEWNSQYENYKKLFEYMNSKS 470
>Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical
protein F58H1.1a protein.
Length = 1143
Score = 35.5 bits (78), Expect = 0.009
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 143 NVDEKIALFMDYVSNQAQNYRTNNVIITMGGDFTYQDAVMW---YKNLDKLIEYSNLKA 310
NV + + D ++Q ++ N + +G DF Y W Y+N KL EY N K+
Sbjct: 410 NVAHRAEMIYDQYRKKSQLFKNNVIFQPLGDDFRYDIDFEWNSQYENYKKLFEYMNSKS 468
>Z81534-2|CAB04344.2| 226|Caenorhabditis elegans Hypothetical
protein F37H8.3 protein.
Length = 226
Score = 29.1 bits (62), Expect = 0.79
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +2
Query: 164 LFMDYVSNQAQNYRTNNVIITMGGDFTYQDAVMWYKNLDKLIEYSNLKAAKDGL 325
LF+ Y+ ++ N T+NV+I + + V +KN+ K +E + K K +
Sbjct: 75 LFLQYLKHKYGNKLTDNVVIKPFTECLRGENVKIHKNMQKTVEILHKKGFKTAM 128
>Z81105-4|CAB03219.1| 299|Caenorhabditis elegans Hypothetical
protein R05D7.4 protein.
Length = 299
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 152 EKIALFMDYVSNQAQNYRTNNVIITMGGDFTYQDAV--MWYKNLDKLI 289
E + LF+D V + + R N + +MGG + A+ W ++KLI
Sbjct: 100 EDLVLFIDKVKEETKKTRVNLLGHSMGGKIVMRLAIDSKWSDRIEKLI 147
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 91 YTVRRRSDSGRSGLASLQCRRKDCVVYGLRE*SSSKLQD 207
+ V ++ + G ++ R KDC+V G+ + S LQD
Sbjct: 18 FQVEYAQEAVKKGSTAVGVRGKDCIVIGVEKKSIPALQD 56
>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
protein F56H9.5 protein.
Length = 1139
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 236 DFTYQDAVMWYKNLDKLIEY 295
DF +Q +YK L ++IEY
Sbjct: 318 DFRWQSTTFFYKKLPQIIEY 337
>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
protein F56H9.5 protein.
Length = 1139
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 236 DFTYQDAVMWYKNLDKLIEY 295
DF +Q +YK L ++IEY
Sbjct: 318 DFRWQSTTFFYKKLPQIIEY 337
>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
protein.
Length = 1139
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 236 DFTYQDAVMWYKNLDKLIEY 295
DF +Q +YK L ++IEY
Sbjct: 318 DFRWQSTTFFYKKLPQIIEY 337
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,192,284
Number of Sequences: 27780
Number of extensions: 125309
Number of successful extensions: 327
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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