Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P19
         (326 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   0.71 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   0.71 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   2.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   2.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    20   6.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   6.6  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    20   6.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   8.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   8.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 0.71
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 43  WSSV*HILAAAWILFRYTVRRRSD 114
           W+++ +I+  AW LF   V  R D
Sbjct: 110 WTNIYYIIILAWALFYLLVSLRID 133


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 0.71
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 43  WSSV*HILAAAWILFRYTVRRRSD 114
           W+++ +I+  AW LF   V  R D
Sbjct: 163 WTNIYYIIILAWALFYLLVSLRID 186


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 10/40 (25%), Positives = 16/40 (40%)
 Frame = +2

Query: 77  GFCFXXXXXXXXXXXXXXSPLFNVDEKIALFMDYVSNQAQ 196
           GFCF              S +FN  +  A    ++S ++Q
Sbjct: 729 GFCFTVVYAALLTKTNRISRIFNASKHSAKRPSFISPRSQ 768


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 218 LHCLSCSFELDYSRNP*TTQSFRRH*REASPD 123
           ++C S  FE D      TT  +  H   ++PD
Sbjct: 65  INCDSSKFEEDLMNKLPTTPEYNNHLYGSTPD 96


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 206 SCSFELDYSRNP*TTQSFRRH*RE 135
           SC+F +D S        FRR  RE
Sbjct: 188 SCAFGIDMSSMTNENSEFRRMGRE 211


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 142 QCRRKDCVVYGLR 180
           +CR K C+  G+R
Sbjct: 241 ECRLKKCLTVGMR 253


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 142 QCRRKDCVVYGLR 180
           +CR K C+  G+R
Sbjct: 38  ECRLKKCLTVGMR 50


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
          protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 17 IGEASDIFTGVL 52
          +G+ SD+ TG+L
Sbjct: 40 LGDLSDVHTGIL 51


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +2

Query: 167 FMDYVSNQAQNYRTNNVIITMGGD 238
           + D +S   +  R    I+T+G D
Sbjct: 445 YCDVISGNLEKGRCTGKIVTVGSD 468


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,454
Number of Sequences: 438
Number of extensions: 1931
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)