Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P17
         (260 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    25   2.2  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    23   5.1  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    23   5.1  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    23   5.1  
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family...    23   5.1  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    23   6.7  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    23   8.8  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    23   8.8  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    23   8.8  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    23   8.8  

>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 207 AFETKPYGDD*PEHTDTTNICFWCFT 130
           A   K  G+D  E  D   ICF CFT
Sbjct: 152 ALMKKYMGEDLCELQDAIRICFSCFT 177


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +2

Query: 56  LKKKLKRIEEYMQRRRSRGLSARMYVKHQK 145
           LK ++ ++E+Y+++       ARM ++  K
Sbjct: 405 LKHQIHKVEDYLRKNHKGSKDARMRIELSK 434


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 119 LRDRGCACVAYIL-QCVLIFFLIL 51
           LR     CV YIL  C+++FF+ L
Sbjct: 504 LRPLTIRCVPYILLACLILFFMTL 527


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
            Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 62   FLILPY*KLYPNYIQQIK 9
            FL LP  KLYP+Y   IK
Sbjct: 1092 FLELPSKKLYPDYYMIIK 1109


>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 236 SPIRLYNEPVLSKRNHMVMISRNTQTR--QTFVFGVL 132
           +P  L N   ++ +NH++ ISR    +  +T V G L
Sbjct: 106 TPFALINAAAIAPKNHLLSISRQELQKCFETNVIGQL 142


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 7/24 (29%), Positives = 18/24 (75%)
 Frame = +2

Query: 56  LKKKLKRIEEYMQRRRSRGLSARM 127
           L KK+++ ++ ++R+  + ++ARM
Sbjct: 426 LPKKMRKAQKKLERKAGKAVAARM 449


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 218 NEPVLSKRNHMVMIS 174
           N+  LS++NH VM+S
Sbjct: 156 NDQALSEKNHEVMVS 170


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 251 CVGSSSPIRLYNEPVLSKRNHMVMISRN 168
           C+ S+S   +Y E VLS R  +++  RN
Sbjct: 393 CLASASE-EVYKEAVLSIRGKLIVWERN 419


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 135 NTKNKCLSCLCVPANHH 185
           + +N C++C C P+  H
Sbjct: 31  SNENGCINCRCSPSEPH 47


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 260 VSLCVGSSSPIRLYNEPVLSKRNH 189
           V +C G S+PI  +N    S+ NH
Sbjct: 79  VDICNGCSTPICEFNAVSNSQANH 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,092,999
Number of Sequences: 5004
Number of extensions: 19735
Number of successful extensions: 46
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)