Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P17
         (260 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0758 + 5843702-5843874,5844021-5844083,5844174-5844290,584...    27   2.1  
02_04_0366 - 22389591-22390527,22391296-22391429,22391762-223918...    26   3.6  
09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800     26   4.8  
05_06_0273 - 26851077-26851167,26851433-26851869,26852125-268522...    26   4.8  
02_02_0450 - 10381360-10381391,10381737-10382283,10382770-103829...    26   4.8  
01_01_0759 + 5855467-5855639,5855753-5855815,5855914-5856057,585...    25   6.3  
12_01_0961 + 9566730-9566998,9567096-9567187,9567294-9567427,956...    25   8.4  
06_03_0553 - 22048530-22048532,22049733-22050848                       25   8.4  

>01_01_0758 +
           5843702-5843874,5844021-5844083,5844174-5844290,
           5847180-5847945
          Length = 372

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 260 VSLCVGSSSPIRLYNEPVLSKRNH 189
           V LC+G    I LY+ P LS  NH
Sbjct: 136 VGLCLGGVLVIALYSGPALSPLNH 159


>02_04_0366 -
           22389591-22390527,22391296-22391429,22391762-22391816,
           22392364-22393225,22393342-22393459,22393647-22393737,
           22394627-22394670
          Length = 746

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 78  LKNICNAGAAAVSQLECM*NTKNKCLSCLCVPANHH 185
           L+ +  +G   +S  E   N  N CL C+C  +  H
Sbjct: 10  LEKLRRSGRQCISAAEENGNINNACLCCICACSRMH 45


>09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800
          Length = 863

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = -3

Query: 258 ISLRRFELTYPTL*RACAFETKPYGDD*PEHTDTTNICFWCFTYILAERPRLRLRCIYSS 79
           I L + EL   +L +A     K +GD   E  ++ + C W   Y L   P   LR     
Sbjct: 163 ICLDKGELFDRSLFQAYVRANKIFGDKVMEAINSDDDCVWVHDYHLMLLPTF-LRKKLHR 221

Query: 78  MRFNFFFNTP 49
           ++  FF ++P
Sbjct: 222 IKIGFFLHSP 231


>05_06_0273 -
           26851077-26851167,26851433-26851869,26852125-26852271,
           26852352-26854415,26854792-26854908,26855007-26855093,
           26855350-26855439,26855523-26855609,26856736-26856810
          Length = 1064

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 161 SVCSG*SSPYGFVSKAQARYRVG 229
           SVCSG   P+GF  K    Y  G
Sbjct: 627 SVCSGCRQPFGFTRKRHNCYNCG 649


>02_02_0450 -
           10381360-10381391,10381737-10382283,10382770-10382952,
           10383123-10383863
          Length = 500

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 200 KRNHMVMISRNTQTRQTFVFGVLHTF*LRDRGCACVAYI 84
           KR   + +  N+   + + FG++ T  L  RGC C+ +I
Sbjct: 393 KRMKGMEVDTNSIHDEKYTFGLVPTVVLIKRGCHCLQHI 431


>01_01_0759 +
           5855467-5855639,5855753-5855815,5855914-5856057,
           5856146-5856920
          Length = 384

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 260 VSLCVGSSSPIRLYNEPVLSKRNH 189
           V LCVG    I LY  P +S  NH
Sbjct: 145 VVLCVGGVLAIALYAGPAISPVNH 168


>12_01_0961 +
           9566730-9566998,9567096-9567187,9567294-9567427,
           9567542-9567591,9569026-9569100,9569179-9569734
          Length = 391

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 81  KNICNAGAAAVSQLECM*NTKNKCLSCLCV 170
           K  C+  AAA S+L CM   + +    +C+
Sbjct: 139 KEACSEKAAATSELPCMDRLREELSCAICL 168


>06_03_0553 - 22048530-22048532,22049733-22050848
          Length = 372

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +2

Query: 62  KKLKRIEEYMQRRRSRGLSARMYVKHQKQMFVVSVCSG*SSPYGFVSKAQAR 217
           KKLK   E + +R +R        +HQ+Q+      +G  +P GF   A+AR
Sbjct: 123 KKLKARVEDVSQRNTRYRFTNDLTQHQQQLVSSGSATGGGAP-GFDILAEAR 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,580,620
Number of Sequences: 37544
Number of extensions: 115142
Number of successful extensions: 226
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)