Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P17
         (260 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73976-1|CAA98289.1|  324|Caenorhabditis elegans Hypothetical pr...    27   1.8  
AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical ...    26   4.2  
Z81030-16|CAB02712.2|  378|Caenorhabditis elegans Hypothetical p...    25   7.4  
Z81030-15|CAC70075.2|  369|Caenorhabditis elegans Hypothetical p...    25   7.4  
Z75547-7|CAA99904.1|  302|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U60059-1|AAC47518.1|  376|Caenorhabditis elegans UNC-76 protein.       25   7.4  
U60058-1|AAC47517.1|  379|Caenorhabditis elegans UNC-76 protein.       25   7.4  
U28153-1|AAA68954.1|  385|Caenorhabditis elegans UNC-76 protein.       25   7.4  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    25   9.8  
U42839-4|AAM54197.1|  114|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>Z73976-1|CAA98289.1|  324|Caenorhabditis elegans Hypothetical
           protein T07C12.1 protein.
          Length = 324

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -3

Query: 159 TTNICFWCFTYILAERPRLRLRCIYSSMRFNFFFNTPVL 43
           T N+C+ CFT  +         C Y  +   +FF +  L
Sbjct: 49  TFNVCYSCFTVFVPVDVHTYRYCFYMFINGGYFFESSTL 87


>AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical
           protein ZK355.4 protein.
          Length = 485

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 242 SSSPIRLYNEPVLSKRNHMVMISRNT 165
           SS+P+ LY+ P+L + N+  ++ R T
Sbjct: 446 SSTPVALYDNPLLFQNNYECLMFRIT 471


>Z81030-16|CAB02712.2|  378|Caenorhabditis elegans Hypothetical
           protein C01G10.11a protein.
          Length = 378

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 260 VSLCVGSSSPIRLYNEPVLSKRNHMVMISRNTQTRQTFV 144
           V+LC      IR+YNE ++ +  H   +    + + +F+
Sbjct: 253 VTLCAEMEQLIRVYNESLVDELAHRDELDYEKEMKNSFI 291


>Z81030-15|CAC70075.2|  369|Caenorhabditis elegans Hypothetical
           protein C01G10.11b protein.
          Length = 369

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 260 VSLCVGSSSPIRLYNEPVLSKRNHMVMISRNTQTRQTFV 144
           V+LC      IR+YNE ++ +  H   +    + + +F+
Sbjct: 253 VTLCAEMEQLIRVYNESLVDELAHRDELDYEKEMKNSFI 291


>Z75547-7|CAA99904.1|  302|Caenorhabditis elegans Hypothetical
           protein R11D1.6 protein.
          Length = 302

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 104 CACVAYILQCVLIFFLILPY*KLYPNY 24
           C C+  IL C +I+ +I    K   NY
Sbjct: 17  CVCLTIILNCYMIYLIINKSPKKIGNY 43


>U60059-1|AAC47518.1|  376|Caenorhabditis elegans UNC-76 protein.
          Length = 376

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 260 VSLCVGSSSPIRLYNEPVLSKRNHMVMISRNTQTRQTFV 144
           V+LC      IR+YNE ++ +  H   +    + + +F+
Sbjct: 260 VTLCAEMEQLIRVYNESLVDELAHRDELDYEKEMKNSFI 298


>U60058-1|AAC47517.1|  379|Caenorhabditis elegans UNC-76 protein.
          Length = 379

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 260 VSLCVGSSSPIRLYNEPVLSKRNHMVMISRNTQTRQTFV 144
           V+LC      IR+YNE ++ +  H   +    + + +F+
Sbjct: 254 VTLCAEMEQLIRVYNESLVDELAHRDELDYEKEMKNSFI 292


>U28153-1|AAA68954.1|  385|Caenorhabditis elegans UNC-76 protein.
          Length = 385

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 260 VSLCVGSSSPIRLYNEPVLSKRNHMVMISRNTQTRQTFV 144
           V+LC      IR+YNE ++ +  H   +    + + +F+
Sbjct: 260 VTLCAEMEQLIRVYNESLVDELAHRDELDYEKEMKNSFI 298


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 162  DTTNICFWCFTYILAERPRLRLRC 91
            D  ++C  CFT  L   P +RL C
Sbjct: 3512 DGDDVCVICFTERLGAAPCIRLGC 3535


>U42839-4|AAM54197.1|  114|Caenorhabditis elegans Hypothetical
           protein F11C7.7 protein.
          Length = 114

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 94  TQAQPRSLS*NVCKTPKTNVC 156
           T++QP S S N+C  P  + C
Sbjct: 74  TESQPCSSSDNICMAPSPSCC 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,027,432
Number of Sequences: 27780
Number of extensions: 112735
Number of successful extensions: 229
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 12,740,198
effective HSP length: 65
effective length of database: 10,934,498
effective search space used: 229624458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)