Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P16
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   203   6e-54
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   203   6e-54
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       29   0.23 
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    28   0.52 
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   1.6  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   2.1  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    25   3.7  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   3.7  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   4.9  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    25   4.9  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    24   6.4  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    24   8.5  
SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   8.5  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  203 bits (496), Expect = 6e-54
 Identities = 89/112 (79%), Positives = 100/112 (89%)
 Frame = +2

Query: 29  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEFEQL 208
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+E+EQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 209 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINNMLSCAGADRLQ 364
           +SEALEA RIC NKYLVK  GKD FH+R+R HPFHV+RIN MLSCAGADRLQ
Sbjct: 61  TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQ 112


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  203 bits (496), Expect = 6e-54
 Identities = 89/112 (79%), Positives = 100/112 (89%)
 Frame = +2

Query: 29  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEFEQL 208
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+E+EQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 209 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINNMLSCAGADRLQ 364
           +SEALEA RIC NKYLVK  GKD FH+R+R HPFHV+RIN MLSCAGADRLQ
Sbjct: 61  TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQ 112


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 29.1 bits (62), Expect = 0.23
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +2

Query: 53  YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEFEQLSSEALEA 229
           Y+   N     ++FC  V +  KI   +  +KRA +D   LC+  +S + E ++  +LE+
Sbjct: 34  YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93

Query: 230 G 232
           G
Sbjct: 94  G 94


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 27.9 bits (59), Expect = 0.52
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 110 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEFEQLSSEALEA 229
           DPK+R+F    KRAT  +   C   LV+ +   + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 8   GRFVENTMGRRPARCYRYCKNKPYPK 85
           G F++N  G +   C+  C  K YPK
Sbjct: 423 GEFLKNAAGMQCIDCHYTCHKKCYPK 448


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 224 PAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLGQA 105
           P P +S+ R  Q+LSA +  S+P   S  PS   GSL  +
Sbjct: 473 PKPSSSSRRRSQSLSAMLKTSNPYMPS--PSLLSGSLANS 510


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 169 WEVIHCRSLFAQVENTDLWVRHTPT 95
           + ++H  +LFA  EN D ++   PT
Sbjct: 343 YAILHWNTLFANEENWDSYIPQDPT 367


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 272 KDQFHIRMRLHPFHVIRINNMLSCAGAD 355
           +D  H+RM ++ FH   IN+MLS +  D
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRD 883


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +2

Query: 86  SRFCRGVPDPKIRIFDLGKKRATVDDFP-LCVHLVSDE 196
           S FC   PDPK       K  A  DD P +  H+ S++
Sbjct: 84  SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 135 WAKRERQWMTSH 170
           W +RERQW+  H
Sbjct: 91  WLRRERQWLQRH 102


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +2

Query: 131  DLGKKRATVDDFPLCVHLVSDEFEQL---SSEALEAGRICCN--KYLVKNCGK 274
            ++ KKRA  DD    + +VS E+E L   SS+  ++     N  KY+ KN  K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 200 EQLSSEALEAGRICCN 247
           E LSS+ +   RICCN
Sbjct: 262 ESLSSQQMSCLRICCN 277


>SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 159

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +2

Query: 167 PLCVHLVSDEFEQLSSEALE 226
           P+C+  + DEFE++ ++  +
Sbjct: 66  PICIDNIPDEFEEIDAKTFD 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,626,141
Number of Sequences: 5004
Number of extensions: 31771
Number of successful extensions: 107
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)