Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P15
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   0.83 
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    25   4.4  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    24   7.8  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    24   7.8  

>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.1 bits (57), Expect = 0.83
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 162 SLNRISPSKLSIYTKEPDRLTCSLEQDP--VGTDSGGSLKEDIRSISSDEFLA 314
           SL+ +SP +LS Y+   D  T SLE  P  + T S    +  +R+ +  E+++
Sbjct: 52  SLDSLSPRRLSNYSSAVDPRTTSLEDVPRLILTRSNSQEQTPLRTHTPVEYMS 104


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 183 SKLSIYTKEPDRL-TCSLEQDPVGTDSGGSLKEDIRSISSD 302
           S L IY ++  +L  CS  +  +G + GGS    +R +  D
Sbjct: 426 SLLRIYGRQAKKLIVCSFSEAYLGANGGGSQYGRLRIVGED 466


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 307 NSSLEIDLMSSFKLPPESV-PTGSCSNEHV 221
           +S LE    SSF +PPES+ PT S  +  V
Sbjct: 179 DSPLEPSSSSSFSVPPESLNPTLSFQHNDV 208


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -1

Query: 304 SSLEIDLMSSFKLPPESVPTGSCSNEHVNLSGSLV*IDSFDGD-ILFKLL 158
           +S E+D+ +S K  P  + T +  ++H N+  ++   D  DG+ I  KLL
Sbjct: 6   TSDEVDISNSLKAFPVDIATDNQKDKHENVGENV--SDEDDGNYIASKLL 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,445,221
Number of Sequences: 5004
Number of extensions: 28194
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)