Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_P15
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0419 - 21967330-21967575                                         27   5.3  
10_06_0180 + 11526139-11526172,11526365-11527218                       26   7.1  
09_02_0586 + 10948079-10948283,10948506-10948615                       26   7.1  
07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948     26   7.1  
09_06_0302 - 22144271-22144543,22144946-22145083,22146004-221462...    26   9.3  
07_03_1092 - 23903436-23903534,23903650-23903715,23903832-239038...    26   9.3  
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611...    26   9.3  

>01_05_0419 - 21967330-21967575
          Length = 81

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 195 IYTKEPDRLTCSLEQDPVGTDSGGSLKEDIRSISSDEFLAM 317
           +Y  +PD LT  L  DP+  +    L +++ +I + +  A+
Sbjct: 9   VYEADPDALTVDLVDDPLVKEFRDKLVDEVLTIDAGDMEAL 49


>10_06_0180 + 11526139-11526172,11526365-11527218
          Length = 295

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 249 GTDSGGSLKEDIRSISSDEFLAMERSAELD 338
           G   GG L E  R +++++  A+ERS E D
Sbjct: 45  GGGGGGGLGEKKRRLAAEQVRALERSFEAD 74


>09_02_0586 + 10948079-10948283,10948506-10948615
          Length = 104

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 168 NRISPSKLSIYTKEPDRLTCSLEQ 239
           +R  P K   Y  +PDRL C+L +
Sbjct: 79  DRTGPPKYVYYVTKPDRLLCALRR 102


>07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948
          Length = 712

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = +2

Query: 230 VGTGPRRYRL----GREFKRRHQIDFKRRVPCDGTI 325
           V  GP +Y +    GR      Q D++ RVP DGT+
Sbjct: 212 VDMGPYKYLVHGEEGRSTPPSEQTDYRTRVPEDGTV 247


>09_06_0302 -
           22144271-22144543,22144946-22145083,22146004-22146278,
           22146486-22146957
          Length = 385

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 189 VSTEISCLNCYKLSRYWLSRWRFS 118
           V  +++C+N  K+S Y  S W FS
Sbjct: 151 VKNQLTCVNTIKMSMYEGSCWAFS 174


>07_03_1092 -
           23903436-23903534,23903650-23903715,23903832-23903897,
           23903984-23904187,23904284-23904688
          Length = 279

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 234 EQDPVGTDSGGSLKEDIRSISS 299
           ++DP+G+D GG+   D +S SS
Sbjct: 145 KKDPIGSDEGGNTYIDTQSSSS 166


>06_01_0811 -
           6113491-6113925,6114079-6114185,6114569-6114788,
           6115112-6115199,6115301-6115431,6115924-6116099,
           6116465-6116529,6117014-6117094,6117219-6117358,
           6117446-6117532,6117614-6117827,6118102-6118260,
           6118860-6118936,6119629-6119796
          Length = 715

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 213 DRLTCSLEQDPVGTDSGGSLKEDIRSISSDE 305
           D L   L  DP+   SGG L ED     +DE
Sbjct: 230 DMLAQMLRDDPLFKPSGGKLGEDDMDYDTDE 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,253,495
Number of Sequences: 37544
Number of extensions: 180749
Number of successful extensions: 403
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)